Assay name​
MM_CAST_2017119 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for Cast
Assay targets 9 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay targets 9 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Gene symbol​
Cast
Species​
Mus musculus
Main target​
ENSMUST00000223126
Exons numbers​
25-26
Ensembl exons ids​
ENSMUSE00000119196;ENSMUSE00000434312
Amplicon start​
1964
Amplicon length​
70
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000065629
Protein coding
CCDS26648
NM_009817
Chr.13: 74694288 - 74807939
ENSMUST00000220738
Protein coding
NM_001301158;NM_001301181
Chr.13: 74694611 - 74734261
ENSMUST00000221208
Retained intron
Chr.13: 74699105 - 74700885
ENSMUST00000221873
Retained intron
Chr.13: 74698737 - 74700707
ENSMUST00000222588
Protein coding
NM_001301156
Chr.13: 74692368 - 74770736
ENSMUST00000223033
Protein coding
NM_001301155
Chr.13: 74694243 - 74770649
ENSMUST00000223126
Protein coding
NM_001301157
Chr.13: 74694255 - 74770590
ENSMUST00000223206
Protein coding
NM_001301153
Chr.13: 74692368 - 74808810
ENSMUST00000223309
Protein coding
NM_001301160
Chr.13: 74694663 - 74734231