Assay name​
MM_CLCN3_2035573 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for Clcn3
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol​
Clcn3
Species​
Mus musculus
Main target​
ENSMUST00000110302
Exons numbers​
3-4
Ensembl exons ids​
ENSMUSE00001247923;ENSMUSE00000582210
Amplicon start​
422
Amplicon length​
95
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000004430
Protein coding
CCDS52555
NM_173874
Chr.8: 60911923 - 60983239
ENSMUST00000056508
Protein coding
CCDS22322
NM_173876
Chr.8: 60910389 - 60955233
ENSMUST00000093490
Protein coding
CCDS22323
NM_007711
Chr.8: 60910389 - 60983300
ENSMUST00000110301
Protein coding
CCDS52554
NM_173873
Chr.8: 60911923 - 60983239
ENSMUST00000110302
Protein coding
Chr.8: 60911896 - 60954748
ENSMUST00000129672
Retained intron
Chr.8: 60911923 - 60955233
ENSMUST00000132234
Retained intron
Chr.8: 60928295 - 60954779
ENSMUST00000147824
Retained intron
Chr.8: 60935357 - 60983244