Assay name
MM_PNKP_2038879 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for Pnkp
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
Pnkp
Species
Mus musculus
Main target
ENSMUST00000003044
Exons numbers
3-4
Ensembl exons ids
ENSMUSE00001228075;ENSMUSE00001229351
Amplicon start
688
Amplicon length
78
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000003044
Protein coding
CCDS39945
NM_021549;NM_001290764;NM_001290767
Chr.7: 44857159 - 44862992
ENSMUST00000098478
Protein coding
CCDS71955
NM_001290766
Chr.7: 44857342 - 44862649
ENSMUST00000107876
Protein coding
CCDS39945
Chr.7: 44857139 - 44862650
ENSMUST00000124168
Nonsense mediated decay
Chr.7: 44857340 - 44861351
ENSMUST00000139003
Nonsense mediated decay
Chr.7: 44857173 - 44860424
ENSMUST00000145850
Retained intron
Chr.7: 44857167 - 44862656
ENSMUST00000155050
Nonsense mediated decay
Chr.7: 44857379 - 44862641
ENSMUST00000201882
Nonsense mediated decay
Chr.7: 44857394 - 44862650