Assay name
MM_STAG1_2158652 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for Stag1
Best transcript assay for ENSMUST00000123315
Assay targets 11 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Best transcript assay for ENSMUST00000123315
Assay targets 11 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
Stag1
Species
Mus musculus
Main target
ENSMUST00000123315
Exons numbers
3-4
Ensembl exons ids
ENSMUSE00001271960;ENSMUSE00000730503
Amplicon start
282
Amplicon length
67
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000041418
Protein coding
Chr.9: 100643613 - 100958544
ENSMUST00000123302
Nonsense mediated decay
Chr.9: 100643768 - 100957406
ENSMUST00000123315
Retained intron
Chr.9: 100643613 - 100712690
ENSMUST00000124487
Protein coding
Chr.9: 100597798 - 100737996
ENSMUST00000129269
Protein coding
CCDS23441
NM_009282
Chr.9: 100643448 - 100958545
ENSMUST00000133388
Protein coding
Chr.9: 100643770 - 100776795
ENSMUST00000138405
Nonsense mediated decay
Chr.9: 100643616 - 100867293
ENSMUST00000143816
Retained intron
Chr.9: 100643600 - 100739597
ENSMUST00000144005
Retained intron
Chr.9: 100643613 - 100712709
ENSMUST00000146312
Protein coding
Chr.9: 100643448 - 100796791
ENSMUST00000155108
Nonsense mediated decay
Chr.9: 100643636 - 100957399