Assay name​
MM_CLN3_2189184 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for Cln3
Assay targets 14 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 14 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol​
Cln3
Species​
Mus musculus
Main target​
ENSMUST00000150587
Exons numbers​
3-4
Ensembl exons ids​
ENSMUSE00001309608;ENSMUSE00000742346
Amplicon start​
401
Amplicon length​
75
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000032962
Protein coding
CCDS21833
NM_009907
Chr.7: 126571400 - 126583247
ENSMUST00000084589
Protein coding
CCDS21833
Chr.7: 126571207 - 126585817
ENSMUST00000098036
Protein coding
Chr.7: 126572086 - 126583190
ENSMUST00000116269
Protein coding
CCDS21833
NM_001146311
Chr.7: 126571400 - 126584280
ENSMUST00000125508
Protein coding
Chr.7: 126579409 - 126583523
ENSMUST00000128225
Processed transcript
Chr.7: 126579211 - 126583226
ENSMUST00000128970
Protein coding
Chr.7: 126579263 - 126584220
ENSMUST00000134246
Retained intron
Chr.7: 126580270 - 126583114
ENSMUST00000134406
Retained intron
Chr.7: 126580831 - 126583316
ENSMUST00000134498
Processed transcript
Chr.7: 126581513 - 126583342
ENSMUST00000150311
Protein coding
Chr.7: 126581661 - 126584578
ENSMUST00000150587
Protein coding
Chr.7: 126581658 - 126583566
ENSMUST00000150917
Nonsense mediated decay
Chr.7: 126579247 - 126583362
ENSMUST00000153790
Retained intron
Chr.7: 126578359 - 126584307