Assay name
MM_PRKN_2194691 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for Prkn
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
Prkn
Species
Mus musculus
Main target
ENSMUST00000066658
Exons numbers
5-6
Ensembl exons ids
ENSMUSE00001329632;ENSMUSE00001321070
Amplicon start
658
Amplicon length
105
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000066658
Retained intron
Chr.17: 10840384 - 11557234
ENSMUST00000168593
Protein coding
Chr.17: 11067125 - 11493173
ENSMUST00000186167
Processed transcript
Chr.17: 10840384 - 11557234
ENSMUST00000186406
Protein coding
Chr.17: 11303647 - 11610945
ENSMUST00000191124
Protein coding
CCDS79506
NM_016694
Chr.17: 10840384 - 12063361
ENSMUST00000218435
Protein coding
NM_001317726
Chr.17: 11067125 - 11635446
ENSMUST00000233634
Nonsense mediated decay
Chr.17: 10840413 - 12061678
ENSMUST00000233706
Protein coding
Chr.17: 10840470 - 12061678