Assay name
MM_CHD9_2198560 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for Chd9
Best transcript assay for ENSMUST00000209746
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Best transcript assay for ENSMUST00000209746
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
Chd9
Species
Mus musculus
Main target
ENSMUST00000209746
Exons numbers
2-3
Ensembl exons ids
ENSMUSE00001382556;ENSMUSE00001074276
Amplicon start
69
Amplicon length
109
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000048665
Protein coding
CCDS22517
NM_177224
Chr.8: 90828352 - 91054516
ENSMUST00000109614
Protein coding
CCDS80912
Chr.8: 90828835 - 91054508
ENSMUST00000209203
Nonsense mediated decay
Chr.8: 90932344 - 91052663
ENSMUST00000209341
Retained intron
Chr.8: 90955435 - 90990632
ENSMUST00000209423
Protein coding
CCDS80912
NM_001310530
Chr.8: 90932344 - 91052663
ENSMUST00000209746
Protein coding
Chr.8: 90955270 - 90976947
ENSMUST00000210947
Protein coding
Chr.8: 90954958 - 91006545
ENSMUST00000211403
Protein coding
Chr.8: 90908614 - 90976950