Assay name
MM_COL2A1_2279872 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for Col2a1
Best transcript assay for ENSMUST00000139246
Assay targets 5 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENSMUST00000139246
Assay targets 5 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
Col2a1
Species
Mus musculus
Main target
ENSMUST00000139246
Exons numbers
5-6
Ensembl exons ids
ENSMUSE00001229797;ENSMUSE00001213488
Amplicon start
330
Amplicon length
92
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000023123
Protein coding
CCDS37189
NM_031163
Chr.15: 97975602 - 98004695
ENSMUST00000088355
Protein coding
CCDS49716
NM_001113515
Chr.15: 97975602 - 98004657
ENSMUST00000131560
Processed transcript
Chr.15: 97976719 - 98000505
ENSMUST00000133488
Processed transcript
Chr.15: 97995019 - 97999693
ENSMUST00000139246
Retained intron
Chr.15: 97994868 - 97999465