Assay name
MM_CASK_2288893 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for Cask
Assay targets 7 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 7 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
Cask
Species
Mus musculus
Main target
ENSMUST00000132240
Exons numbers
2-3
Ensembl exons ids
ENSMUSE00001291836;ENSMUSE00000734264
Amplicon start
269
Amplicon length
85
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000033321
Protein coding
Chr.X: 13521331 - 13846556
ENSMUST00000115436
Protein coding
CCDS40878
NM_001284504;NM_009806
Chr.X: 13517080 - 13846541
ENSMUST00000115438
Protein coding
CCDS72343
NM_001284505;NM_001284503
Chr.X: 13517080 - 13846578
ENSMUST00000124710
Protein coding
Chr.X: 13626280 - 13846088
ENSMUST00000132240
Processed transcript
Chr.X: 13714731 - 13851367
ENSMUST00000152358
Retained intron
Chr.X: 13554584 - 13846578
ENSMUST00000156096
Protein coding
Chr.X: 13517080 - 13786030