ATXN1 Gene Summary [Human]

The autosomal dominant cerebellar ataxias (ADCA) are a heterogeneous group of neurodegenerative disorders characterized by progressive degeneration of the cerebellum, brain stem and spinal cord. Clinically, ADCA has been divided into three groups: ADCA types I-III. ADCAI is genetically heterogeneous, with five genetic loci, designated spinocerebellar ataxia (SCA) 1, 2, 3, 4 and 6, being assigned to five different chromosomes. ADCAII, which always presents with retinal degeneration (SCA7), and ADCAIII often referred to as the `pure' cerebellar syndrome (SCA5), are most likely homogeneous disorders. Several SCA genes have been cloned and shown to contain CAG repeats in their coding regions. ADCA is caused by the expansion of the CAG repeats, producing an elongated polyglutamine tract in the corresponding protein. The expanded repeats are variable in size and unstable, usually increasing in size when transmitted to successive generations. The function of the ataxins is not known. This locus has been mapped to chromosome 6, and it has been determined that the diseased allele contains 40-83 CAG repeats, compared to 6-39 in the normal allele, and is associated with spinocerebellar ataxia type 1 (SCA1). Alternative splicing results in multiple transcript variants, with one variant encoding multiple distinct proteins, ATXN1 and Alt-ATXN1, due to the use of overlapping alternate reading frames. [provided by RefSeq, Nov 2017]

Details

Type
Protein Coding
Official Symbol
ATXN1
Official Name
ataxin 1 [Source:HGNC Symbol;Acc:HGNC:10548]
Ensembl ID
ENSG00000124788
Bio databases IDs NCBI: 6310 Ensembl: ENSG00000124788
Aliases ataxin 1
Synonyms 2900016G23RIK, ataxin 1, ATX1, circATXN1, circRNA-ATXN1, D6S504E, Gm10786, SCA1
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human ATXN1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • transcription regulator
  • self-association domain
  • nuclear localization sequence
  • chromatin binding
  • protein domain specific binding
  • protein binding
  • identical protein binding
  • single-stranded RNA binding
  • RNA binding
  • poly(U) binding protein
  • AXH domain
  • Ataxin-1 like family
  • polyglutamine repeat
  • Ataxin-1 and HBP1 module (AXH)
  • glutamine repeat domain

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • Huntington disease
  • motor dysfunction
  • coronary artery disease
  • bipolar disorder
  • schizophrenia
  • atrial fibrillation
  • systemic lupus erythematosus
  • ischemic cardiomyopathy
  • hepatocellular carcinoma
  • glioma formation
regulated by
regulates
role in cell
  • cell death
  • signaling in
  • apoptosis
  • proliferation
  • expression in
  • phosphorylation in
  • quantity
  • formation
  • formation in
  • dephosphorylation in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • interchromatin granule cluster fractions
  • Cytoplasm
  • cell surface
  • cytosol
  • nucleoplasm
  • perinuclear space
  • nucleoli
  • nuclear matrix
  • perikaryon
  • dendrites

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human ATXN1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • negative regulation of transcription from RNA polymerase II promoter
  • social behavior
  • nuclear export
  • negative regulation of transcription, DNA-dependent
  • nervous system development
  • RNA processing
  • brain development
  • learning
  • memory

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • nuclear inclusion body
  • cytoplasm
  • nuclear matrix
  • cytosol
  • nucleolus
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • DNA binding
  • identical protein binding
  • protein binding
  • poly(G) RNA binding
  • poly(U) RNA binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.