ATXN2 Gene Summary [Human]

This gene belongs to a group of genes that is associated with microsatellite-expansion diseases, a class of neurological and neuromuscular disorders caused by expansion of short stretches of repetitive DNA. The protein encoded by this gene has two globular domains near the N-terminus, one of which contains a clathrin-mediated trans-Golgi signal and an endoplasmic reticulum exit signal. The encoded cytoplasmic protein localizes to the endoplasmic reticulum and plasma membrane, is involved in endocytosis, and modulates mTOR signals, modifying ribosomal translation and mitochondrial function. The N-terminal region of the protein contains a polyglutamine tract of 14-31 residues that can be expanded in the pathogenic state to 32-200 residues. Intermediate length expansions of this tract increase susceptibility to amyotrophic lateral sclerosis, while long expansions of this tract result in spinocerebellar ataxia-2, an autosomal-dominantly inherited, neurodegenerative disorder. Genome-wide association studies indicate that loss-of-function mutations in this gene may be associated with susceptibility to type I diabetes, obesity and hypertension. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2016]

Details

Type
Nonsense Mediated Decay
Official Symbol
ATXN2
Official Name
ataxin 2 [Source:HGNC Symbol;Acc:HGNC:10555]
Ensembl ID
ENSG00000204842
Bio databases IDs NCBI: 6311 Ensembl: ENSG00000204842
Aliases ataxin 2, trinucleotide repeat containing 13
Synonyms 9630045M23RIK, Ataxin-2, ATX2, AW544490, SCA2, TNRC13
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human ATXN2 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Sm and related proteins
  • Ataxin 2 SM domain
  • Ataxin-2 C-terminal region
  • epidermal growth factor receptor binding
  • polyglutamine repeat
  • glutamine repeat domain
  • LsmAD domain
  • protein binding
  • Sh3 domain binding motif

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • cancer
  • neoplasia
  • gastroesophageal reflux
  • neurological disorder
  • autoimmune thyroid disease
  • inflammatory bowel disease
  • heart disease
  • rheumatoid arthritis
  • insulin-dependent diabetes mellitus
  • systemic lupus erythematosus
regulated by
regulates
role in cell
  • loss
  • cell death
  • apoptosis
  • activation in
  • quantity
  • expression in
  • formation
  • phosphorylation in
  • accumulation in
  • number

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Cytoplasm
  • perinuclear region
  • Golgi Apparatus
  • cytosol
  • trans Golgi network
  • stress granule
  • axons

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human ATXN2 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • regulation of translation
  • stress granule assembly
  • RNA metabolic process
  • negative regulation of receptor internalization
  • cytoplasmic mRNA processing body assembly
  • RNA transport

Cellular Component

Where in the cell the gene product is active
  • trans-Golgi network
  • perinuclear region of cytoplasm
  • cytoplasmic stress granule
  • cytoplasm
  • membrane
  • cytosol
  • Golgi apparatus

Molecular Function

What the gene product does at the molecular level
  • RNA binding
  • protein binding
  • epidermal growth factor receptor binding
  • mRNA binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.