USB1 Gene Summary [Human]

This gene encodes a protein with several conserved domains, however, its exact function is not known. Mutations in this gene are associated with poikiloderma with neutropenia (PN), which shows phenotypic overlap with Rothmund-Thomson syndrome (RTS) caused by mutations in the RECQL4 gene. It is believed that this gene product interacts with RECQL4 protein via SMAD4 proteins, explaining the partial clinical overlap between PN and RTS. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Mar 2011]

Details

Type
Protein Coding
Official Symbol
USB1
Official Name
U6 snRNA biogenesis phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:25792]
Ensembl ID
ENSG00000103005
Bio databases IDs NCBI: 79650 Ensembl: ENSG00000103005
Aliases U6 snRNA biogenesis phosphodiesterase 1, HVSL motif containing 1, poikiloderma with neutropenia, U six biogenesis 1, mutated in poikiloderma with neutropenia protein 1
Synonyms C16orf57, hMpn1, hUsb1, HVSL1, Mpn1, PN, RGD1305215, U6 snRNA biogenesis 1, U6 snRNA biogenesis phosphodiesterase 1
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human USB1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • 3'-5' exoribonuclease
  • Uncharacterized conserved protein
  • enzyme
  • protein binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • poikiloderma with neutropenia
regulated by
  • RUNX1-RUNX1T1

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • cytoplasmic bridges
  • nucleoplasm

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human USB1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • RNA splicing
  • snRNA 3'-end processing
  • U6 snRNA 3'-end processing

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • intercellular bridge
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • 3'-5'-exoribonuclease activity
  • protein binding
  • lyase activity

Gene-Specific Assays for Results You Can Trust

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