Vipas39 Gene Summary [Mouse]

Acts upstream of or within several processes, including collagen fibril organization; collagen metabolic process; and protein modification process. Predicted to be located in Golgi apparatus and endosome. Predicted to be part of vesicle tethering complex. Predicted to be active in cytoplasm. Is expressed in several structures, including central nervous system; retina layer; and skeletal muscle. Used to study ARC syndrome. Human ortholog(s) of this gene implicated in arthrogryposis, renal dysfunction, and cholestasis 2. Orthologous to human VIPAS39 (VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog). [provided by Alliance of Genome Resources, Apr 2025]

Details

Type
Retained Intron
Official Symbol
Vipas39
Official Name
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog [Source:MGI Symbol;Acc:MGI:2144805]
Ensembl ID
ENSMUSG00000021038
Bio databases IDs NCBI: 104799 Ensembl: ENSMUSG00000021038
Aliases VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Synonyms 6720456H09RIK, 9330175H22RIK, C14orf133, hSPE-39, SPE-39, VIPAR, VPS16B, VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Species
Mouse, Mus musculus
OrthologiesHumanRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Vipas39 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • binding protein
  • protein binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • arthrogryposis, renal dysfunction, and cholestasis type 2
  • arthrogryposis, renal dysfunction, cholestasis
  • arthrogryposis, renal dysfunction, and cholestasis type 1
regulated by
  • L-glutamic acid
  • RABGEF1
  • phycocyanobilin
regulates
role in cell
  • integrity
  • organization
  • appearance

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • detergent resistant lipid raft fraction
  • endosomes
  • Golgi Apparatus
  • trans Golgi network
  • alpha granules
  • recycling endosomes
  • early endosomes
  • late endosomes

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the mouse Vipas39 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • intracellular transport
  • spermatogenesis
  • peptidyl-lysine hydroxylation
  • cell differentiation
  • phagosome-lysosome fusion
  • vacuolar transport
  • endosome to lysosome transport
  • collagen fibril organization
  • intracellular protein transport
  • post-translational protein modification
  • collagen metabolic process

Cellular Component

Where in the cell the gene product is active
  • early endosome
  • endosome
  • cytoplasm
  • late endosome
  • Golgi apparatus
  • recycling endosome
  • HOPS complex

Molecular Function

What the gene product does at the molecular level
  • protein binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.