Sox18 Gene Summary [Rat]

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including establishment of endothelial barrier; regulation of transcription by RNA polymerase II; and vasculature development. Predicted to act upstream of or within several processes, including circulatory system development; regulation of DNA-templated transcription; and stem cell fate specification. Predicted to be located in chromatin. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hypotrichosis-lymphedema-telangiectasia syndrome and hypotrichosis-lymphedema-telangiectasia-renal defect syndrome. Orthologous to human SOX18 (SRY-box transcription factor 18). [provided by Alliance of Genome Resources, Jul 2025]

Details

Type
Protein Coding
Official Symbol
Sox18
Official Name
SRY-box transcription factor 18 [Source:RGD Symbol;Acc:1311718]
Ensembl ID
ENSRNOG00000016248
Bio databases IDs NCBI: 311723 Ensembl: ENSRNOG00000016248
Aliases SRY-box transcription factor 18
Synonyms HLTRS, HLTS, Ra, Ragl, SRY-box transcription factor 18, SRY (sex determining region Y)-box 18
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Sox18 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • RNA polymerase II transcription regulatory region sequence-specific binding transcriptional activator activity
  • activation domain
  • transcription regulator
  • nucleic acid binding
  • high mobility group (HMG)-box domain superfamily
  • transcription activation domain
  • protein binding
  • sequence-specific DNA binding
  • Sox 17/18 central domain
  • DNA binding
  • RNA polymerase II transcription factor activity, sequence-specific DNA binding
  • double-stranded DNA binding
  • HMG (high mobility group) box
  • HMG-box domain
  • high mobility group
  • transcription factor activity

Pathways

Biological processes and signaling networks where the Sox18 gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • metastasis
  • hypotrichosis-lymphedema-telangiectasia syndrome
  • organismal death
  • uterine leiomyoma
  • leiomyomatosis
  • hypotrichosis-lymphedema-telangiectasia-renal defect syndrome
  • Klinefelter syndrome
regulated by
regulates
role in cell
  • expression in
  • proliferation
  • differentiation
  • invasiveness
  • metastatic potential
  • maturation
  • migratory capacity

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Sox18 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • regulation of stem cell proliferation
  • outflow tract morphogenesis
  • stem cell fate specification
  • cell maturation
  • endocardial cell differentiation
  • vasculogenesis
  • hair cycle process
  • lymphatic endothelial cell differentiation
  • embryonic heart tube development
  • positive regulation of transcription from RNA polymerase II promoter
  • blood vessel endothelial cell migration
  • establishment of endothelial barrier
  • endocardium formation
  • negative regulation of transcription from RNA polymerase II promoter
  • hair follicle development
  • negative regulation of transcription, DNA-dependent
  • positive regulation of transcription, DNA-dependent
  • in utero embryonic development
  • angiogenesis
  • vasculature development
  • lymphangiogenesis
  • heart looping

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • transcription factor complex
  • chromatin

Molecular Function

What the gene product does at the molecular level
  • RNA polymerase II core promoter proximal region sequence-specific DNA binding
  • transcription regulatory region sequence-specific DNA binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
  • sequence-specific DNA binding RNA polymerase II transcription factor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.