RT1-Db2 Gene Summary [Rat]

Predicted to enable MHC class II protein complex binding activity and peptide antigen binding activity. Predicted to be involved in several processes, including antigen processing and presentation of exogenous peptide antigen via MHC class II; peptide antigen assembly with MHC class II protein complex; and positive regulation of T cell activation. Predicted to be part of MHC class II protein complex. Predicted to be active in late endosome membrane and lysosomal membrane. Human ortholog(s) of this gene implicated in several diseases, including asthma (multiple); autoimmune disease (multiple); bacterial infectious disease (multiple); eye disease (multiple); and sarcoidosis (multiple). Orthologous to several human genes including HLA-DRB1 (major histocompatibility complex, class II, DR beta 1); HLA-DRB3 (major histocompatibility complex, class II, DR beta 3); and HLA-DRB4 (major histocompatibility complex, class II, DR beta 4). [provided by Alliance of Genome Resources, Apr 2025]

Details

Type
Protein Coding
Official Symbol
RT1-Db2
Official Name
RT1 class II, locus Db2 [Source:RGD Symbol;Acc:1595922]
Ensembl ID
ENSRNOG00000030431
Bio databases IDs NCBI: 24981 Ensembl: ENSRNOG00000030431
Aliases RT1 class II, locus Db2
Synonyms A130038H09Rik, Db2, histocompatibility 2, class II antigen E beta2, Ia-5, Iebeta2, RT1 class II, locus Db2, RT1-Db2
Species
Rat, Rattus norvegicus
OrthologiesMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Rt1-Db2 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Immunoglobulin C1-set domain
  • MHC class II receptor
  • immunoglobulin domain
  • T-cell receptor binding
  • polysaccharide binding
  • transmembrane receptor
  • peptide antigen binding
  • Class II histocompatibility antigen, beta domain
  • CD4 receptor binding

Pathways

Biological processes and signaling networks where the Rt1-Db2 gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • dextran sodium sulfate-induced colitis
  • insulin-dependent diabetes mellitus
regulated by

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • cell surface
  • immunological synapses
  • plasma membrane extracellular face
  • lysosome membrane
  • endosomal membrane

Gene-Specific Assays for Results You Can Trust

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