CAPN9 Gene Summary [Human]

Calpains are ubiquitous, well-conserved family of calcium-dependent, cysteine proteases. The calpain proteins are heterodimers consisting of an invariant small subunit and variable large subunits. The large subunit possesses a cysteine protease domain, and both subunits possess calcium-binding domains. Calpains have been implicated in neurodegenerative processes, as their activation can be triggered by calcium influx and oxidative stress. The protein encoded by this gene is expressed predominantly in stomach and small intestine and may have specialized functions in the digestive tract. This gene is thought to be associated with gastric cancer. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
CAPN9
Official Name
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Ensembl ID
ENSG00000135773
Bio databases IDs NCBI: 10753 Ensembl: ENSG00000135773
Aliases calpain 9, novel calpain large subunit-4
Synonyms 2200003B16Rik, calpain 9, GC36, nCL-4
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human CAPN9 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • The penta-EF hand (PEF) family
  • Calpain family cysteine protease
  • EF-hand domain
  • calpain
  • EF hand
  • peptidase
  • calcium ion binding
  • EFh
  • Calpain_III
  • CysPc

Pathways

Biological processes and signaling networks where the CAPN9 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
disease
  • coronary artery disease
  • gastric cancer
  • pathologic myopia
regulated by
  • tetrachlorodibenzodioxin
  • PRDM2
  • CEACAM1
  • TP63
  • BLD-2660
  • 3,4,5,3',4'-pentachlorobiphenyl

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human CAPN9 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • proteolysis
  • digestion

Cellular Component

Where in the cell the gene product is active
  • cytoplasm

Molecular Function

What the gene product does at the molecular level
  • calcium ion binding
  • calcium-dependent cysteine-type endopeptidase activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.