COL4A6 Gene Summary [Human]

This gene encodes one of the six subunits of type IV collagen, the major structural component of basement membranes. Like the other members of the type IV collagen gene family, this gene is organized in a head-to-head conformation with another type IV collagen gene, alpha 5 type IV collagen, so that the gene pair shares a common promoter. Deletions in the alpha 5 gene that extend into the alpha 6 gene result in diffuse leiomyomatosis accompanying the X-linked Alport syndrome caused by the deletion in the alpha 5 gene. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2013]

Details

Type
Protein Coding
Official Symbol
COL4A6
Official Name
collagen type IV alpha 6 chain [Source:HGNC Symbol;Acc:HGNC:2208]
Ensembl ID
ENSG00000197565
Bio databases IDs NCBI: 1288 Ensembl: ENSG00000197565
Aliases collagen type IV alpha 6 chain
Synonyms AL691493.3, collagen, type IV, alpha 6, collagen type IV alpha 6 chain, collagen, type IV, α 6, collagen type IV α 6 chain, CXDELq22.3, DELXq22.3, DFNX6
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human COL4A6 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • extracellular matrix structural constituent
  • Collagen triple helix repeat (20 copies)
  • C-terminal tandem repeated domain in type 4 procollagen
  • protein binding

Pathways

Biological processes and signaling networks where the COL4A6 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
disease
  • rheumatoid arthritis
  • Peyronie disease
  • cellulite of the buttocks
  • Dupuytren contracture
  • burn
  • X-linked deafness type 6
  • colorectal cancer
  • cholesteatoma
  • diabetic foot ulcer disorder
  • uterine serous papillary cancer
regulated by
role in cell
  • organization

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Extracellular Space
  • cell surface
  • endoplasmic reticulum lumen
  • basement membrane
  • glomerular basement membrane

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human COL4A6 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • cellular response to amino acid stimulus
  • extracellular matrix organization
  • cell adhesion
  • collagen-activated tyrosine kinase receptor signaling pathway

Cellular Component

Where in the cell the gene product is active
  • endoplasmic reticulum lumen
  • basement membrane
  • extracellular space
  • collagen type IV
  • extracellular region

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • extracellular matrix structural constituent conferring tensile strength

Gene-Specific Assays for Results You Can Trust

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