VPS52 Gene Summary [Human]

This gene encodes a protein that is similar to the yeast suppressor of actin mutations 2 gene. The yeast protein forms a subunit of the tetrameric Golgi-associated retrograde protein complex that is involved in vesicle trafficking from from both early and late endosomes, back to the trans-Golgi network. This gene is located on chromosome 6 in a head-to-head orientation with the gene encoding ribosomal protein S18. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]

Details

Type
Nonsense Mediated Decay
Official Symbol
VPS52
Official Name
VPS52 subunit of GARP complex [Source:HGNC Symbol;Acc:HGNC:10518]
Ensembl ID
ENSG00000206286
Bio databases IDs NCBI: 6293 Ensembl: ENSG00000206286
Aliases VPS52 subunit of GARP complex
Synonyms ARE1, D130068D18, D430041K17Rik, dJ1033B10.5, SAC2, SACM2L, tclw5, VPS52 GARP complex subunit, VPS52 subunit of GARP complex
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human VPS52 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Exocyst complex component Sec3
  • protein binding
  • Vps52 / Sac2 family
  • syntaxin binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
regulated by
  • genistein
  • GnRH analog
  • daidzein
role in cell
  • differentiation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • presynaptic regions
  • perinuclear region
  • postsynaptic region
  • cellular membrane
  • Golgi Apparatus
  • Golgi membrane
  • trans Golgi network
  • endosomal membrane
  • recycling endosomes

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human VPS52 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • protein targeting
  • lysosomal transport
  • protein transport
  • ectodermal cell differentiation
  • embryonic ectodermal digestive tract development
  • retrograde transport, endosome to Golgi
  • endocytic recycling
  • vesicle-mediated cholesterol transport
  • Golgi to vacuole transport

Cellular Component

Where in the cell the gene product is active
  • perinuclear region of cytoplasm
  • GARP complex
  • membrane
  • cytosol
  • endosome membrane
  • Golgi apparatus
  • recycling endosome
  • trans-Golgi network membrane

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • syntaxin binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.