Prpf39 Gene Summary [Rat]
Predicted to contribute to pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP; U2-type prespliceosome; and commitment complex. Orthologous to human PRPF39 (pre-mRNA processing factor 39). [provided by Alliance of Genome Resources, Apr 2025]
Details
| Type | Protein Coding |
| Official Symbol | Prpf39 |
| Official Name | pre-mRNA processing factor 39 [Source:RGD Symbol;Acc:1308702] |
| Ensembl ID | ENSRNOG00000004521 |
| Bio databases IDs | |
| Aliases | pre-mRNA processing factor 39 |
| Synonyms | pre-mRNA processing factor 39, SRCS1 |
| Species | Rat, Rattus norvegicus |
| Orthologies |
Protein Domains
A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Prpf39 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
- HAT (Half-A-TPR) repeats
- protein binding
Pathways
Biological processes and signaling networks where the Prpf39 gene in rat plays a role, providing insight into its function and relevance in health or disease.
Subcellular Expression
Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
- Nucleus
Gene Ontology Annotations
Describes the biological processes, cellular components, and molecular functions associated with the rat Prpf39 gene, providing context for its role in the cell.
Biological Process
Functions and activities the gene product is involved in
- nuclear mRNA 5'-splice site recognition
Cellular Component
Where in the cell the gene product is active
- commitment complex
- U2-type prespliceosome
- U1 snRNP
Molecular Function
What the gene product does at the molecular level
- protein binding
- pre-mRNA 5'-splice site binding