Ythdc2 Gene Summary [Rat]
Predicted to enable several functions, including 3'-5' RNA helicase activity; N6-methyladenosine-containing RNA reader activity; and RNA polymerase binding activity. Predicted to be involved in several processes, including germ cell development; germline cell cycle switching, mitotic to meiotic cell cycle; and positive regulation by host of viral genome replication. Predicted to be located in endoplasmic reticulum and ribonucleoprotein granule. Orthologous to human YTHDC2 (YTH N6-methyladenosine RNA binding protein C2). [provided by Alliance of Genome Resources, Jul 2025]
Details
| Type | Protein Coding |
| Official Symbol | Ythdc2 |
| Official Name | YTH domain containing 2 [Source:RGD Symbol;Acc:1563192] |
| Ensembl ID | ENSRNOG00000039241 |
| Bio databases IDs | |
| Aliases | YTH domain containing 2 |
| Synonyms | 3010002F02RIK, CAHL, hYTHDC2, LOC100365272, mYTHDC2, RGD1563192, YTH domain containing 2, YTH N6-methyladenosine RNA binding protein C2 |
| Species | Rat, Rattus norvegicus |
| Orthologies |
Protein Domains
A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Ythdc2 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
- Helicase associated domain (HA2)
- Oligonucleotide/oligosaccharide-binding (OB)-fold
- R3H
- EVE and YTH domains belong to the PUA superfamily
- DEAD/DEAH box helicase
- protein binding activity, bridging
- helicase superfamily c-terminal domain
- Ankyrin repeats (3 copies)
- enzyme binding
- enzyme
- protein binding
- YT521-B-like domain
- RNA helicase
- RNA dependent ATPase
- Helicase conserved C-terminal domain
- RNA binding
- AAA domain
- Helicase associated domain (HA2) Add an annotation
- R3H domain
- N-terminal helicase domain of the DEAD-box helicase superfamily
- DEAD-like helicases superfamily
- P-loop containing Nucleoside Triphosphate Hydrolases
Top Findings
The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
- neoplasia
- colorectal cancer
- melanoma
- melanoma cancer
- non-insulin-dependent diabetes mellitus
- organismal death
- cervical cancer
- lung adenocarcinoma
- lung adenocarcinoma formation
- lung squamous cell carcinoma
regulated by
- MEIOSIN/STRA8
- cigarette smoke
- KDM2A
role in cell
- expression in
- migration
- proliferation
- differentiation
- replication in
- downregulation in
- upregulation in
- development
- prophase II
Subcellular Expression
Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
- Cytoplasm
- ribonucleoprotein granule
- Endoplasmic Reticulum
Gene Ontology Annotations
Describes the biological processes, cellular components, and molecular functions associated with the rat Ythdc2 gene, providing context for its role in the cell.
Biological Process
Functions and activities the gene product is involved in
- meiotic cell cycle
- oocyte development
- spermatid development
- germline cell cycle switching, mitotic to meiotic cell cycle
- response to interleukin-1
- response to tumor necrosis factor
Cellular Component
Where in the cell the gene product is active
- ribonucleoprotein granule
- perinuclear region of cytoplasm
- endoplasmic reticulum
- intracellular
Molecular Function
What the gene product does at the molecular level
- ATPase activity
- RNA polymerase binding
- ATP binding
- protein binding
- RNA binding
- RNA-dependent ATPase activity
- helicase activity
- 3'-5' RNA helicase activity