SMNDC1 Gene Summary [Human]

This gene is a paralog of SMN1 gene, which encodes the survival motor neuron protein, mutations in which are cause of autosomal recessive proximal spinal muscular atrophy. The protein encoded by this gene is a nuclear protein that has been identified as a constituent of the spliceosome complex. This gene is differentially expressed, with abundant levels in skeletal muscle, and may share similar cellular function as the SMN1 gene. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
SMNDC1
Official Name
survival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
Ensembl ID
ENSG00000119953
Bio databases IDs NCBI: 10285 Ensembl: ENSG00000119953
Aliases survival motor neuron domain containing 1, splicing factor 30, survival of motor neuron-related, tudor domain containing 16C
Synonyms 2410004J23RIK, SMNR, SPF30, survival motor neuron domain containing 1, TDRD16C
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SMNDC1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • protein binding
  • Tudor domain superfamily

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
regulates
regulated by
  • lipopolysaccharide
  • imatinib
  • arsenic trioxide
  • EP4-D
  • fingolimod
  • histone H3
  • RNase
  • N(G)-monomethyl-D-arginine
  • DAP3
role in cell
  • expression in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • spliceosomes
  • nucleoplasm
  • interchromatin granule clusters
  • nuclear speckles
  • Cajal bodies

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SMNDC1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • RNA splicing, via transesterification reactions
  • apoptotic process
  • mRNA processing

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • cytoplasm
  • nuclear speck
  • Cajal body
  • spliceosomal complex
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • RNA binding
  • protein binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.