ATG4D Gene Summary [Human]

Autophagy is the process by which endogenous proteins and damaged organelles are destroyed intracellularly. Autophagy is postulated to be essential for cell homeostasis and cell remodeling during differentiation, metamorphosis, non-apoptotic cell death, and aging. Reduced levels of autophagy have been described in some malignant tumors, and a role for autophagy in controlling the unregulated cell growth linked to cancer has been proposed. This gene belongs to the autophagy-related protein 4 (Atg4) family of C54 endopeptidases. Members of this family encode proteins that play a role in the biogenesis of autophagosomes, which sequester the cytosol and organelles for degradation by lysosomes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

Details

Type
Nonsense Mediated Decay
Official Symbol
ATG4D
Official Name
autophagy related 4D cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:20789]
Ensembl ID
ENSG00000130734
Bio databases IDs NCBI: 84971 Ensembl: ENSG00000130734
Aliases autophagy related 4D cysteine peptidase
Synonyms 9830134P12Rik, APG4-D, Atg4dl, AUTL4, Autophagin-4, autophagy related 4D cysteine peptidase, autophagy related 4D, cysteine peptidase, HsAPG4D
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human ATG4D often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • cysteine-type peptidase
  • peptidase
  • Peptidase family C54
  • exopeptidase

Pathways

Biological processes and signaling networks where the ATG4D gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
regulated by
  • MIR101
  • CASP3
  • F. tularensis Schu4
  • WBP2
  • Francisella novicida
  • prednisolone
  • S-allyl-L-cysteine sulfoxide
  • FLCN
role in cell
  • formation
  • autophagy by
  • assembly

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • Mitochondria
  • nucleoplasm

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human ATG4D gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • protein localization to pre-autophagosomal structure
  • protein transport
  • macromitophagy
  • C-terminal protein lipidation
  • protein delipidation
  • autophagic vacuole assembly
  • piecemeal microautophagy of nucleus
  • autophagy
  • apoptotic process
  • proteolysis
  • protein processing
  • aggrephagy

Cellular Component

Where in the cell the gene product is active
  • mitochondrial matrix
  • cytoplasm
  • mitochondrion
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • cysteine-type endopeptidase activity
  • cysteine-type peptidase activity
  • APG8-specific protease activity

Gene-Specific Assays for Results You Can Trust

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