H3f3b Gene Summary [Rat]

Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Predicted to be a structural constituent of chromatin. Predicted to be involved in nucleosome assembly; oocyte maturation; and positive regulation of cell growth. Predicted to act upstream of or within several processes, including constitutive heterochromatin formation; negative regulation of chromosome condensation; and osteoblast differentiation. Predicted to be located in Barr body; chromosome, telomeric region; and nucleoplasm. Predicted to be part of inner kinetochore and nucleosome. Predicted to be active in chromatin and chromosome, centromeric region. Human ortholog(s) of this gene implicated in Bryant-Li-Bhoj neurodevelopmental syndrome 1. Orthologous to several human genes including H3-3A (H3.3 histone A). [provided by Alliance of Genome Resources, Jul 2025]

Details

Type
Protein Coding
Official Symbol
H3f3b
Official Name
H3 histone family member 3B [Source:RGD Symbol;Acc:621095]
Ensembl ID
ENSRNOG00000003220
Bio databases IDs NCBI: 100361558 Ensembl: ENSRNOG00000003220
Aliases H3 histone family member 3B
Synonyms BRYLIB1, EyeLinc14, H3.3, H3.3A, H3-3B, H3.3 histone A, H3F3, H3F3A, Histone H3.3, LOC100045490
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat H3f3b often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • structural constituent of chromatin
  • histone fold domain (HFD) superfamily
  • binding protein
  • double-stranded DNA binding
  • nucleic acid binding
  • Core histone H2A/H2B/H3/H4
  • chromatin binding
  • protein binding
  • sequence-specific DNA binding
  • DNA binding
  • Histone H3

Pathways

Biological processes and signaling networks where the H3f3b gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • brain neoplasm
  • head and neck neoplasia
  • diffuse infiltrative glioma
  • glioma formation
  • pediatric diffuse intrinsic pontine glioma
  • pediatric gliomatosis
  • glioma cancer
  • brain glioma formation
  • pediatric cancer
regulated by
  • sirolimus
  • SYK/ZAP
  • HNRNPH1
  • romidepsin
  • N-acetyl-L-cysteine
  • bafilomycin
  • CIGB-300
  • NP-KLH
  • etoposide
  • DAXX
regulates
role in cell
  • cell cycle progression
  • growth
  • proliferation
  • cell death
  • expression in
  • activation in
  • phosphorylation in
  • differentiation
  • quantity
  • formation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Extracellular Space
  • chromosome
  • nucleosomes
  • nucleoplasm
  • Barr body
  • kinetochores
  • centromeres
  • telomeres
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat H3f3b gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • multicellular organism growth
  • cell proliferation
  • male gonad development
  • spermatid development
  • regulation of centromere complex assembly
  • single fertilization
  • nucleus organization
  • nucleosome assembly
  • embryo implantation
  • positive regulation of cell growth
  • oocyte maturation
  • telomeric heterochromatin assembly
  • centromeric heterochromatin assembly
  • muscle cell differentiation
  • osteoblast differentiation
  • telomere organization

Cellular Component

Where in the cell the gene product is active
  • Barr body
  • nucleus
  • chromosome, telomeric region
  • condensed chromosome inner kinetochore
  • extracellular vesicular exosome
  • macromolecular complex
  • nucleosome
  • extracellular region
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • structural constituent of chromatin
  • protein binding
  • protein heterodimerization activity
  • RNA polymerase II core promoter sequence-specific DNA binding
  • RNA polymerase II core promoter proximal region sequence-specific DNA binding
  • nucleosomal DNA binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.