Ccdc88c Gene Summary [Rat]
Predicted to enable several functions, including G-protein alpha-subunit binding activity; PDZ domain binding activity; and dynein light intermediate chain binding activity. Predicted to be involved in several processes, including apical constriction; negative regulation of canonical Wnt signaling pathway; and protein destabilization. Predicted to act upstream of or within with a positive effect on positive regulation of JNK cascade. Predicted to act upstream of or within several processes, including mucociliary clearance; negative regulation of microtubule depolymerization; and respiratory basal cell differentiation. Predicted to be located in cell junction. Predicted to be active in apical junction complex; centrosome; and cytoplasm. Human ortholog(s) of this gene implicated in hydrocephalus and spinocerebellar ataxia type 40. Orthologous to human CCDC88C (coiled-coil domain containing 88C). [provided by Alliance of Genome Resources, Jul 2025]
Details
| Type | Protein Coding |
| Official Symbol | Ccdc88c |
| Official Name | coiled-coil domain containing 88C [Source:RGD Symbol;Acc:1307429] |
| Ensembl ID | ENSRNOG00000004482 |
| Bio databases IDs | |
| Aliases | coiled-coil domain containing 88C |
| Synonyms | 0610010D24Rik, AW324073, coiled-coil domain containing 88C, DAPLE, HKRP2, HYC1, KIAA1509, LOC217831, mKIAA1509, RGD1307429, SCA40 |
| Species | Rat, Rattus norvegicus |
| Orthologies |
Protein Domains
A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Ccdc88c often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
- Hook domain-containing proteins superfamily
- protein dimerization
- Autophagy protein 16 (ATG16)
- Ciliary protein causing Leber congenital amaurosis disease
- frizzled binding
- Uncharacterized conserved protein H4 (DUF2046)
- Synaptonemal complex protein 1 (SCP-1)
- Autophagy protein ATG17-like domain
- helix-rich Mycoplasma protein
- Tektin family
- identical protein binding
- Laminin Domain I
- chromosome segregation protein SMC, common bacterial type
- Prefoldin subunit
- Tropomyosin
- Myosin-like coiled-coil protein
- Treacher Collins syndrome protein Treacle
- HOOK protein coiled-coil region
- Mitotic checkpoint protein
- Crescentin protein
- chromosome segregation protein SMC, primarily archaeal type
- Domain of unknown function (DUF4515)
- exonuclease SbcC
- TPR/MLP1/MLP2-like protein
- Weak chloroplast movement under blue light
- Tropomyosin like
- Hyaluronan mediated motility receptor N-terminal
- rad50
- HOOK domain
- Myosin tail
- protein binding
- Calcium binding and coiled-coil domain (CALCOCO1) like
- PDZ-domain binding
- Alpha helical coiled-coil rod protein (HCR)
- RecF/RecN/SMC N terminal domain
- microtubule binding
- Mechanosensitive ion channel porin domain
- RIM-binding protein of the cytomatrix active zone
- prefoldin
- guanyl-nucleotide exchange factor
- Growth-arrest specific micro-tubule binding
- Coiled-coil domain-containing protein 158
- Intermediate filament protein
- GBA motif
- Septation ring formation regulator, EzrA
Top Findings
The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
- hypertension
- prostatic carcinoma
- prostate cancer
- epithelial cancer
- breast carcinoma
- autosomal recessive nonsyndromic hydrocephalus type 1
- hereditary spastic ataxia
- ovarian carcinoma
- epithelial ovarian cancer
- diabetic nephropathy
role in cell
- growth
- phosphorylation in
- transcription in
- differentiation
- formation
- development
- movement
- depolymerization
- organization
- binding in
Subcellular Expression
Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
- Cytoplasm
- cell junction
- intercellular junctions
- cytosol
Gene Ontology Annotations
Describes the biological processes, cellular components, and molecular functions associated with the rat Ccdc88c gene, providing context for its role in the cell.
Biological Process
Functions and activities the gene product is involved in
- protein destabilization
- negative regulation of canonical Wnt receptor signaling pathway
- cytoskeleton-dependent intracellular transport
- small GTPase mediated signal transduction
- regulation of protein phosphorylation
- positive regulation of JNK cascade
- apical constriction
- cytoplasmic microtubule organization
- non-canonical Wnt receptor signaling pathway
Cellular Component
Where in the cell the gene product is active
- centrosome
- anchoring junction
- cytoplasm
- cell junction
Molecular Function
What the gene product does at the molecular level
- frizzled binding
- identical protein binding
- protein binding
- G-protein alpha-subunit binding
- guanyl-nucleotide exchange factor activity
- PDZ domain binding
- dynein light intermediate chain binding
- microtubule binding