Limd1 Gene Summary [Rat]
Predicted to enable transcription corepressor activity. Predicted to be involved in several processes, including negative regulation of macromolecule biosynthetic process; negative regulation of osteoblast differentiation; and negative regulation of signal transduction. Predicted to act upstream of or within P-body assembly and miRNA-mediated post-transcriptional gene silencing. Predicted to be located in several cellular components, including focal adhesion; nucleoplasm; and plasma membrane. Predicted to be part of RISC complex and transcription regulator complex. Predicted to be active in P-body; adherens junction; and nucleus. Orthologous to human LIMD1 (LIM domain containing 1). [provided by Alliance of Genome Resources, Jul 2025]
Details
| Type | Protein Coding |
| Official Symbol | Limd1 |
| Official Name | LIM domains containing 1 [Source:RGD Symbol;Acc:1309830] |
| Ensembl ID | ENSRNOG00000004837 |
| Bio databases IDs | |
| Aliases | LIM domains containing 1 |
| Synonyms | D9Ertd192e, LIM domain containing 1, LIM domains containing 1 |
| Species | Rat, Rattus norvegicus |
| Orthologies |
Protein Domains
A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Limd1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
- PreLIM domain
- transcription regulator
- LIM is a small protein-protein interaction domain, containing two zinc fingers
- transcription co-repressor
- protein binding
Top Findings
The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
- neoplasia
- COVID-19
- hepatocellular carcinoma
- doxorubicin induced cardiotoxicity
- liver cancer
- epithelial cancer
- lung adenocarcinoma
- lung adenocarcinoma formation
- Dupuytren contracture
- overall survival
role in cell
- quantity
- activation in
- expression in
- assembly
- differentiation
- development
- function
- organization
- abnormal number
Subcellular Expression
Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
- Nucleus
- cytoplasmic mRNA processing body
- Cytoplasm
- focal adhesions
- Plasma Membrane
- cytosol
- nucleoplasm
- cell-cell adherens junctions
Gene Ontology Annotations
Describes the biological processes, cellular components, and molecular functions associated with the rat Limd1 gene, providing context for its role in the cell.
Biological Process
Functions and activities the gene product is involved in
- regulation of cell shape
- negative regulation of hippo signaling cascade
- negative regulation of translation involved in gene silencing by miRNA
- cytoskeleton organization
- gene silencing by miRNA
- regulation of transcription, DNA-dependent
- osteoblast development
- negative regulation of osteoblast differentiation
- negative regulation of canonical Wnt receptor signaling pathway
- response to hypoxia
- negative regulation of transcription, DNA-dependent
- cytoplasmic mRNA processing body assembly
- phosphorylation
- cell migration
Cellular Component
Where in the cell the gene product is active
- transcription factor complex
- nucleus
- adherens junction
- focal adhesion
- cytoplasm
- cytoplasmic mRNA processing body
- cytosol
- RNA-induced silencing complex
- plasma membrane
- nucleoplasm
Molecular Function
What the gene product does at the molecular level
- protein binding
- metal ion binding
- transcription corepressor activity