SCN1A Gene Summary [Human]

Voltage-dependent sodium channels are heteromeric complexes that regulate sodium exchange between intracellular and extracellular spaces and are essential for the generation and propagation of action potentials in muscle cells and neurons. Each sodium channel is composed of a large pore-forming, glycosylated alpha subunit and two smaller beta subunits. This gene encodes a sodium channel alpha subunit, which has four homologous domains, each of which contains six transmembrane regions. Allelic variants of this gene are associated with generalized epilepsy with febrile seizures and epileptic encephalopathy. Alternative splicing results in multiple transcript variants. The RefSeq Project has decided to create four representative RefSeq records. Three of the transcript variants are supported by experimental evidence and the fourth contains alternate 5' untranslated exons, the exact combination of which have not been experimentally confirmed for the full-length transcript. [provided by RefSeq, Oct 2015]

Details

Type
Nonsense Mediated Decay
Official Symbol
SCN1A
Official Name
sodium voltage-gated channel alpha subunit 1 [Source:HGNC Symbol;Acc:HGNC:10585]
Ensembl ID
ENSG00000144285
Bio databases IDs NCBI: 6323 Ensembl: ENSG00000144285
Aliases sodium voltage-gated channel alpha subunit 1
Synonyms B230332M13, DEE6, DEE6A, DEE6B, DRVT, EIEE6, FEB3, FEB3A, FHM3, GEFSP2, HBSCI, LOC102553713, NAC1, Nav1.1, SCN1, SMEI, sodium channel, voltage-gated, type I, alpha, sodium channel, voltage-gated, type I, α, Sodium channel α-1 subunit, sodium voltage-gated channel alpha subunit 1, sodium voltage-gated channel α subunit 1
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SCN1A often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Sodium ion transport-associated
  • Voltage-dependent L-type calcium channel, IQ-associated
  • voltage-gated sodium channel
  • Cytoplasmic domain of voltage-gated Na+ ion channel
  • Ion transport protein
  • metal ion binding
  • pore domain
  • voltage-gated ion channel
  • ion channel
  • Polycystin cation channel

Pathways

Biological processes and signaling networks where the SCN1A gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
disease
  • non-insulin-dependent diabetes mellitus
  • diabetic nephropathy
  • infection
  • hypertension
  • cancer
  • pain
  • constipation
  • Huntington disease
  • postoperative pain
  • localization-related epilepsy
regulated by
  • KMT2A
  • Immunoglobulin
  • Ca2+
  • calpain
  • protease (complex)
  • PLX5622
  • APP
  • GX-585
  • 4-(2-aminoethyl)benzenesulfonylfluoride
  • LMK-235
role in cell
  • transmembrane potential
  • action potential
  • abnormal morphology
  • neurotransmission in
  • neurotransmission

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • detergent-soluble membrane fractions
  • membrane fraction
  • axon component
  • axon initial segment like process
  • outer membranes
  • cellular membrane
  • intercellular junctions
  • presynaptic membrane
  • nucleoplasm
  • nuclear bodies
  • nodes of Ranvier
  • synaptic vesicles
  • axon initial segments
  • Z line
  • transverse tubules
  • perikaryon
  • axons

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SCN1A gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • regulation of cardiac muscle cell action potential involved in contraction
  • determination of adult lifespan
  • nerve development
  • neuromuscular process controlling posture
  • adult walking behavior
  • sodium ion transport
  • sodium ion transmembrane transport
  • detection of mechanical stimulus involved in sensory perception of pain
  • establishment of localization in cell
  • neuronal action potential propagation
  • membrane depolarization involved in regulation of action potential
  • regulation of action potential in neuron

Cellular Component

Where in the cell the gene product is active
  • Z disc
  • T-tubule
  • initial segment
  • nuclear body
  • voltage-gated sodium channel complex
  • node of Ranvier
  • intercalated disc
  • neuronal cell body
  • plasma membrane
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • voltage-gated sodium channel activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.