SDC1 Gene Summary [Human]

The protein encoded by this gene is a transmembrane (type I) heparan sulfate proteoglycan and is a member of the syndecan proteoglycan family. The syndecans mediate cell binding, cell signaling, and cytoskeletal organization and syndecan receptors are required for internalization of the HIV-1 tat protein. The syndecan-1 protein functions as an integral membrane protein and participates in cell proliferation, cell migration and cell-matrix interactions via its receptor for extracellular matrix proteins. Altered syndecan-1 expression has been detected in several different tumor types. While several transcript variants may exist for this gene, the full-length natures of only two have been described to date. These two represent the major variants of this gene and encode the same protein. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
SDC1
Official Name
syndecan 1 [Source:HGNC Symbol;Acc:HGNC:10658]
Ensembl ID
ENSG00000115884
Bio databases IDs NCBI: 6382 Ensembl: ENSG00000115884
Aliases syndecan 1, syndecan proteoglycan 1
Synonyms BB4, CD138, HSPG, SDC, Sdc1 variant 1v, Sstn, syn-1, Syn-1v, Synd, SYND1, SYNDECA, Syndecan, syndecan 1, Syndecan-1v, Z48199
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SDC1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • cargo receptor activity
  • variable domain
  • extracellular matrix binding
  • ectodomain
  • enzyme
  • protein binding
  • identical protein binding
  • integrin binding domain
  • putative band 4.1 homologues' binding motif
  • Syndecan domain
  • core
  • cytoplasmic domain
  • transmembrane domain
  • C2 region of the Syndecan family

Pathways

Biological processes and signaling networks where the SDC1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • Parkinson disease
  • osteoarthritis
  • hyperplasia
  • breast cancer
  • organismal death
  • metastatic colorectal cancer
  • metastasis
  • Hutchinson-Gilford progeria syndrome
  • idiopathic pulmonary fibrosis
regulated by
  • lipopolysaccharide
  • IL1B
  • INS
  • IL2
  • tetrachlorodibenzodioxin
  • LEPR
  • ALB
  • beta-estradiol
  • 5-fluorouracil
  • androgen
regulates
role in cell
  • activation in
  • expression in
  • apoptosis
  • proliferation
  • survival
  • differentiation
  • phosphorylation in
  • migration
  • quantity
  • growth

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • membrane fraction
  • detergent resistant lipid raft fraction
  • Golgi lumen
  • Cytoplasm
  • cell surface
  • Extracellular Space
  • cell periphery
  • cellular membrane
  • cell-cell contacts
  • plasma membrane extracellular face
  • uropod
  • basolateral membrane
  • basal membrane
  • sinusoidal membrane
  • lateral plasma membrane
  • lysosomal compartment

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SDC1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • response to cAMP
  • Sertoli cell development
  • response to hydrogen peroxide
  • response to toxin
  • receptor-mediated endocytosis
  • myoblast development
  • ureteric bud development
  • response to calcium ion
  • response to glucocorticoid stimulus
  • striated muscle cell development
  • canonical Wnt receptor signaling pathway
  • cell migration

Cellular Component

Where in the cell the gene product is active
  • extracellular vesicular exosome
  • external side of plasma membrane
  • lysosomal lumen
  • macromolecular complex
  • Golgi lumen
  • plasma membrane
  • cell surface

Molecular Function

What the gene product does at the molecular level
  • identical protein binding
  • protein binding
  • cargo receptor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.