VPS11 Gene Summary [Human]

Vesicle mediated protein sorting plays an important role in segregation of intracellular molecules into distinct organelles. Genetic studies in yeast have identified more than 40 vacuolar protein sorting (VPS) genes involved in vesicle transport to vacuoles. This gene encodes the human homolog of yeast class C Vps11 protein. The mammalian class C Vps proteins are predominantly associated with late endosomes/lysosomes, and like their yeast counterparts, may mediate vesicle trafficking steps in the endosome/lysosome pathway. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]

Details

Type
Protein Coding
Official Symbol
VPS11
Official Name
VPS11 core subunit of CORVET and HOPS complexes [Source:HGNC Symbol;Acc:HGNC:14583]
Ensembl ID
ENSG00000160695
Bio databases IDs NCBI: 55823 Ensembl: ENSG00000160695
Aliases VPS11 core subunit of CORVET and HOPS complexes
Synonyms 1200011A11Rik, END1, HLD12, HLD12 DYT32, hVPS11, PEP5, RNF108, VPS11 core subunit of CORVET and HOPS complexes, VPS11, CORVET/HOPS core subunit
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human VPS11 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • ubiquitin protein ligase activity
  • Vacuolar protein sorting protein 11 C terminal
  • protein domain specific binding
  • Ring finger domain
  • protein binding
  • syntaxin binding
  • RING-type zinc-finger
  • RING finger (Really Interesting New Gene) domain and U-box domain superfamily
  • Ring finger
  • Region in Clathrin and VPS
  • Clathrin heavy chain repeat homology
  • RING-H2 zinc finger domain
  • transporter
  • Zinc finger, C3HC4 type (RING finger)

Pathways

Biological processes and signaling networks where the VPS11 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • non-insulin-dependent diabetes mellitus
  • hypomyelinating leukodystrophy type 12
  • dystonia type 32
  • coronary artery disease
  • leukoencephalopathy
  • androgenic alopecia
  • infection by murine hepatitis virus
  • infection by feline infectious peritonitis virus
regulated by
regulates
role in cell
  • assembly
  • fusion
  • pravastatin resistance
  • recycling in
  • dipeptide repeat protein sensitivity

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • membrane fraction
  • detergent resistant lipid raft fraction
  • cellular membrane
  • endosomes
  • vesicles
  • lysosome
  • actin filaments
  • cytosol
  • endosomal membrane
  • synapse
  • early endosomes
  • late endosomes
  • endocytotic vesicle
  • cytosolic fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human VPS11 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • regulation of SNARE complex assembly
  • endosome organization
  • vacuole organization
  • positive regulation of protein catabolic process
  • endosome to lysosome transport
  • intracellular protein transport
  • regulation of protein stability
  • organelle fusion
  • autophagy
  • vesicle docking involved in exocytosis
  • negative regulation of intracellular estrogen receptor signaling pathway
  • positive regulation of early endosome to late endosome transport
  • endosomal vesicle fusion
  • protein ubiquitination

Cellular Component

Where in the cell the gene product is active
  • CORVET complex
  • late endosome
  • autophagic vacuole
  • lysosomal membrane
  • lysosome
  • late endosome membrane
  • endocytic vesicle
  • early endosome
  • endosome
  • endosome membrane
  • clathrin-coated vesicle
  • HOPS complex

Molecular Function

What the gene product does at the molecular level
  • nucleotide binding
  • protein domain specific binding
  • protein binding
  • metal ion binding
  • syntaxin binding
  • protein binding, bridging

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.