PCDH9 Gene Summary [Human]

This gene encodes a member of the protocadherin family, and cadherin superfamily, of transmembrane proteins containing cadherin domains. These proteins mediate cell adhesion in neural tissues in the presence of calcium. The encoded protein may be involved in signaling at neuronal synaptic junctions. Sharing a characteristic with other protocadherin genes, this gene has a notably large exon that encodes multiple cadherin domains and a transmembrane region. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Nov 2012]

Details

Type
Protein Coding
Official Symbol
PCDH9
Official Name
protocadherin 9 [Source:HGNC Symbol;Acc:HGNC:8661]
Ensembl ID
ENSG00000184226
Bio databases IDs NCBI: 5101 Ensembl: ENSG00000184226
Aliases protocadherin 9
Synonyms C530050I23RIK, LOC120097141, LOC638275, protocadherin 9
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human PCDH9 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Cadherin-like
  • Cadherin repeat-like domain
  • protein binding
  • Protocadherin

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • obesity
  • neuroticism
  • schizophrenia
  • pervasive developmental disorder
  • insomnia
  • COVID-19
  • colorectal cancer
  • metabolic syndrome X
  • age-related macular degeneration
  • idiopathic scoliosis
regulated by
regulates
role in cell
  • number
  • abnormal morphology
  • interaction

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • glutaminergic synapse
  • cell surface
  • cellular membrane
  • intercellular junctions
  • synaptic membrane
  • growth cone

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human PCDH9 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • forebrain development
  • cell adhesion
  • homophilic cell adhesion

Cellular Component

Where in the cell the gene product is active
  • growth cone
  • cell-cell contact zone
  • plasma membrane

Molecular Function

What the gene product does at the molecular level
  • calcium ion binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.