Snrpn Gene Summary [Mouse]

This locus represents a paternally-expressed imprinted gene that encodes a component of the small nuclear ribonucleoprotein complex, which functions in pre-mRNA processing. Genomic and genetic changes in this region result in growth defects and lethality; the corresponding region in human is the critical region for Prader-Willi Syndrome. Alternative promoter use and alternative splicing result in a multitude of transcript variants encoding the same protein. Transcript variants may be bicistronic and also encode the SNRPN upstream reading frame protein (Snurf) from an upstream open reading frame. In addition, long spliced transcripts for small nucleolar RNA host gene 14 (Snhg14) may originate from the promoters at this locus and incorporate exons shared with this gene. [provided by RefSeq, Mar 2017]

Details

Type
Protein Coding
Official Symbol
Snrpn
Official Name
small nuclear ribonucleoprotein N [Source:MGI Symbol;Acc:MGI:98347]
Ensembl ID
ENSMUSG00000102252
Bio databases IDs NCBI: 20646 Ensembl: ENSMUSG00000102252
Aliases small nuclear ribonucleoprotein N
Synonyms 2410045I01Rik, FE 294, FE 294 psi, HCERN3, LOC647795, Peg4, PWCR, RT-LI, small nuclear ribonucleoprotein N, small nuclear ribonucleoprotein polypeptide N, SM-D, SMN, SNRNP-N, SNURF-SNRPN
Species
Mouse, Mus musculus
OrthologiesHuman

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Snrpn often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Sm and related proteins
  • protein binding

Pathways

Biological processes and signaling networks where the Snrpn gene in mouse plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • prostate cancer
  • growth failure
  • pervasive developmental disorder
  • suicide
  • Prader-Willi syndrome
regulated by
regulates
role in cell
  • branching
  • branching in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • spliceosomes
  • nucleoplasm

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the mouse Snrpn gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • RNA splicing
  • nuclear mRNA splicing, via spliceosome

Cellular Component

Where in the cell the gene product is active
  • catalytic step 2 spliceosome
  • cytoplasm
  • U4/U6 x U5 tri-snRNP complex
  • U5 snRNP
  • spliceosomal complex
  • U2-type prespliceosome
  • U2 snRNP
  • small nuclear ribonucleoprotein complex
  • U1 snRNP
  • U4 snRNP
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • RNA binding
  • protein binding
  • snRNP binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.