Nt5c Gene Summary [Rat]

This gene encodes a nucleotidase that catalyzes the dephosphorylation of the 5' deoxyribonucleotides (dNTP) and 2'(3')-dNTP and ribonucleotides, but not 5' ribonucleotides. Of the different forms of nucleotidases characterized, this enzyme is unique in its preference for 5'-dNTP. It may be one of the enzymes involved in regulating the size of dNTP pools in cells. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Nov 2011]

Details

Type
Protein Coding
Official Symbol
Nt5c
Official Name
5', 3'-nucleotidase, cytosolic [Source:RGD Symbol;Acc:2321875]
Ensembl ID
ENSRNOG00000003650
Bio databases IDs NCBI: 100360582 Ensembl: ENSRNOG00000003650
Aliases 5', 3'-nucleotidase, cytosolic
Synonyms 5', 3'-nucleotidase, cytosolic, cdN, DNT, DNT1, HEL74, P5N2, PN-I, PN-II, UMPH2
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Nt5c often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • 5'-nucleotidase
  • nucleotidase
  • phosphatase
  • pyrimidine nucleotide binding
  • identical protein binding
  • Haloacid Dehalogenase-like Hydrolases
  • 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)

Pathways

Biological processes and signaling networks where the Nt5c gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • Dukes stage C colorectal cancer
regulated by
regulates
  • deoxycytidine
  • dUMP
  • dGMP
  • deoxyribonucleotide
  • IMP
  • cytidine
  • dCMP
  • thymidine
  • UMP
  • allantoin

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • Nucleus
  • Mitochondria
  • cytosol

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Nt5c gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • dTMP catabolic process
  • cellular amide catabolic process
  • dUMP catabolic process
  • dGMP catabolic process
  • pyrimidine deoxyribonucleotide catabolic process
  • IMP catabolic process
  • dephosphorylation
  • UMP catabolic process
  • dCMP catabolic process
  • allantoin metabolic process

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • extracellular vesicular exosome
  • cytoplasm
  • cytosol

Molecular Function

What the gene product does at the molecular level
  • identical protein binding
  • 5'-nucleotidase activity
  • metal ion binding
  • nucleotidase activity
  • IMP 5'-nucleotidase activity
  • pyrimidine nucleotide binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.