Cdk13 Gene Summary [Rat]

Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity; cyclin binding activity; and protein kinase binding activity. Predicted to be involved in several processes, including alternative mRNA splicing, via spliceosome; hemopoiesis; and positive regulation of transcription elongation by RNA polymerase II. Predicted to act upstream of or within negative regulation of stem cell differentiation. Predicted to be located in Golgi apparatus; cytosol; and nuclear speck. Predicted to be part of cyclin K-CDK13 complex and cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in congenital heart defects, dysmorphic facial features, and intellectual developmental disorder; hepatocellular carcinoma; intellectual disability; and prostate carcinoma. Orthologous to human CDK13 (cyclin dependent kinase 13). [provided by Alliance of Genome Resources, Jul 2025]

Details

Type
Protein Coding
Official Symbol
Cdk13
Official Name
cyclin-dependent kinase 13 [Source:RGD Symbol;Acc:1311226]
Ensembl ID
ENSRNOG00000013620
Bio databases IDs NCBI: 306998 Ensembl: ENSRNOG00000013620
Aliases cyclin-dependent kinase 13
Synonyms 2310015O17Rik, CDC2L, CDC2L5, CDC2-RELATED protein KINASE 5, CHDFIDD, CHED, cyclin-dependent kinase 13, hCDK13
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Cdk13 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • kinase
  • Serine/Threonine protein kinases, catalytic domain
  • protein serine/threonine kinase
  • [RNA-polymerase]-subunit kinase
  • protein kinase
  • protein kinase binding
  • Protein Kinases, catalytic domain
  • Protein tyrosine and serine/threonine kinase
  • protein binding
  • Protein kinase domain
  • cyclin binding

Pathways

Biological processes and signaling networks where the Cdk13 gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • congenital heart defects, dysmorphic facial features and intellectual developmental disorder
  • pervasive developmental disorder
  • gastroesophageal reflux
  • syndromic congenital heart disease
  • hereditary disorder
  • marfanoid habitus with mental retardation
  • immune thrombocytopenia
  • tumorigenesis
  • growth failure
  • clear-cell ovarian carcinoma
regulated by
  • TCR (complex)
  • gentamicin
  • SCp2 cells
  • cyclosporin A
  • Exendin4
  • NLRP3
  • mir-133 (includes others)
  • SR4835
  • THZ531
  • SM1-71
regulates
role in cell
  • production in
  • phosphorylation in
  • proliferation
  • expression in
  • cell death
  • cell viability
  • synthesis in
  • differentiation
  • production
  • development

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • ficolin-1-rich granule lumen
  • Extracellular Space
  • Golgi Apparatus
  • cytosol
  • nucleoplasm
  • nuclear speckles

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Cdk13 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • positive regulation of transcription elongation from RNA polymerase II promoter
  • alternative nuclear mRNA splicing, via spliceosome
  • hemopoiesis
  • negative regulation of stem cell differentiation
  • regulation of cell cycle
  • protein phosphorylation
  • positive regulation of transcription from RNA polymerase II promoter
  • regulation of signal transduction

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • extracellular space
  • nuclear cyclin-dependent protein kinase holoenzyme complex
  • nuclear speck
  • cytosol
  • Golgi apparatus
  • positive transcription elongation factor complex b
  • extracellular region
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • protein kinase binding
  • ATP binding
  • protein binding
  • RNA binding
  • RNA polymerase II carboxy-terminal domain kinase activity
  • protein kinase activity
  • cyclin binding
  • cyclin-dependent protein kinase activity

Gene-Specific Assays for Results You Can Trust

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