Gtpbp4 Gene Summary [Rat]

GTP-binding proteins are GTPases and function as molecular switches that can flip between two states: active, when GTP is bound, and inactive, when GDP is bound. 'Active' in this context usually means that the molecule acts as a signal to trigger other events in the cell. When an extracellular ligand binds to a G-protein-linked receptor, the receptor changes its conformation and switches on the trimeric G proteins that associate with it by causing them to eject their GDP and replace it with GTP. The switch is turned off when the G protein hydrolyzes its own bound GTP, converting it back to GDP. But before that occurs, the active protein has an opportunity to diffuse away from the receptor and deliver its message for a prolonged period to its downstream target. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
Gtpbp4
Official Name
GTP binding protein 4 [Source:RGD Symbol;Acc:620783]
Ensembl ID
ENSRNOG00000016217
Bio databases IDs NCBI: 114300 Ensembl: ENSRNOG00000016217
Aliases GTP binding protein 4
Synonyms 2610028C09Rik, CRFG, GTPB4, GTP binding protein 4, Gtpbp3, LOC683324, LOC689822, NGB, NOG1, RGD1563564
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Gtpbp4 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Ferrous iron transport protein B
  • Nucleolar GTP-binding protein 1 (NOG1)
  • 50S ribosome-binding GTPase
  • GTPase
  • enzyme
  • protein binding
  • GTP binding
  • small GTP-binding protein domain
  • NOGCT (NUC087) domain
  • NOG1 N-terminal helical domain
  • ribonucleoprotein binding
  • Rab subfamily of small GTPases
  • Ras of Complex, Roc, domain of DAPkinase
  • P-loop containing Nucleoside Triphosphate Hydrolases

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • chronic kidney disease
  • streptozotocin-induced diabetic nephropathy
  • colorectal cancer
regulated by
  • triamterene
  • phenylbutazone
  • gentamicin C
  • CD3 (complex)
  • CD28
  • fenamic acid
  • indomethacin
  • phenacetin
  • nitrofurantoin
  • cisplatin
regulates
  • TP53
  • NFkB (complex)
  • ribosomal large subunit
  • Rn28s1
  • NF2
  • CCND1
  • RNR
  • Ribosomal Subunit 60s
  • let-7 (includes others)
role in cell
  • growth
  • activation in
  • migration
  • aggregation
  • proliferation
  • cell viability
  • accumulation in
  • processing in
  • function in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • Cytoplasm
  • perinuclear region
  • cytosol
  • chromosome
  • nucleoplasm
  • nucleoli
  • nuclear envelope
  • nuclear scaffolds
  • paraspeckle-like structures

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Gtpbp4 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • negative regulation of collagen binding
  • negative regulation of cell proliferation
  • negative regulation of cell-cell adhesion
  • ribosomal large subunit biogenesis
  • osteoblast differentiation
  • negative regulation of DNA replication
  • negative regulation of protein ubiquitination
  • protein stabilization
  • negative regulation of cell migration
  • regulation of cyclin-dependent protein kinase activity

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • nuclear membrane
  • perinuclear region of cytoplasm
  • cytoplasm
  • membrane
  • cytosol
  • nucleolus
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • GTP binding
  • RNA binding
  • protein binding
  • GTPase activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.