Plec Gene Summary [Rat]

Plectin is a prominent member of an important family of structurally and in part functionally related proteins, termed plakins or cytolinkers, that are capable of interlinking different elements of the cytoskeleton. Plakins, with their multi-domain structure and enormous size, not only play crucial roles in maintaining cell and tissue integrity and orchestrating dynamic changes in cytoarchitecture and cell shape, but also serve as scaffolding platforms for the assembly, positioning, and regulation of signaling complexes (for reviews see PMID: 9701547, 11854008, and 17499243). Plectin is expressed as several protein isoforms in a wide range of cell types and tissues from a single gene located on chromosome 8 in humans (PMID: 8633055, 8698233). Until 2010, this locus was named plectin 1 (symbol PLEC1 in human; Plec1 in mouse and rat) and the gene product had been referred to as "hemidesmosomal protein 1" or "plectin 1, intermediate filament binding 500kDa". These names were replaced by plectin. The plectin gene locus in mouse on chromosome 15 has been analyzed in detail (PMID: 10556294, 14559777), revealing a genomic exon-intron organization with well over 40 exons spanning over 62 kb and an unusual 5' transcript complexity of plectin isoforms. Eleven exons (1-1j) have been identified that alternatively splice directly into a common exon 2 which is the first exon to encode plectin's highly conserved actin binding domain (ABD). Three additional exons (-1, 0a, and 0) splice into an alternative first coding exon (1c), and two additional exons (2alpha and 3alpha) are optionally spliced within the exons encoding the acting binding domain (exons 2-8). Analysis of the human locus has identified eight of the eleven alternative 5' exons found in mouse and rat (PMID: 14672974); exons 1i, 1j and 1h have not been confirmed in human. Furthermore, isoforms lacking the central rod domain encoded by exon 31 have been detected in mouse (PMID:10556294), rat (PMID: 9177781), and human (PMID: 11441066, 10780662, 20052759). The short alternative amino-terminal sequences encoded by the different first exons direct the targeting of the various isoforms to distinct subcellular locations (PMID: 14559777). As the expression of specific plectin isoforms was found to be dependent on cell type (tissue) and stage of development (PMID: 10556294, 12542521, 17389230) it appears that each cell type (tissue) contains a unique set (proportion and composition) of plectin isoforms, as if custom-made for specific requirements of the particular cells. Concordantly, individual isoforms were found to carry out distinct and specific functions (PMID: 14559777, 12542521, 18541706). In 1996, a number of groups reported that patients suffering from epidermolysis bullosa simplex with muscular dystrophy (EBS-MD) lacked plectin expression in skin and muscle tissues due to defects in the plectin gene (PMID: 8698233, 8941634, 8636409, 8894687, 8696340). Two other subtypes of plectin-related EBS have been described: EBS-pyloric atresia (PA) and EBS-Ogna. For reviews of plectin-related diseases see PMID: 15810881, 19945614. Mutations in the plectin gene related to human diseases should be named based on the position in NM_000445 (human variant 1, isoform 1c), unless the mutation is located within one of the other alternative first exons, in which case the position in the respective Reference Sequence should be used. [provided by RefSeq, Aug 2011]

Details

Type
Protein Coding
Official Symbol
Plec
Official Name
plectin [Source:RGD Symbol;Acc:621649]
Ensembl ID
ENSRNOG00000023781
Bio databases IDs NCBI: 64204 Ensembl: ENSRNOG00000023781
Aliases plectin
Synonyms EBS1, EBS5A, EBS5B, EBS5C, EBS5D, EBSMD, EBSND, EBSO, EBSOG, EBSPA, HD1, LGMD2Q, LGMDR17, PCN, PLEC1, PLEC1b, Plectin, PLTN
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Plec often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Spectrin like domain
  • SH3 domain
  • Synaptonemal complex protein 1 (SCP-1)
  • identical protein binding
  • Laminin Domain I
  • chromosome segregation protein SMC, common bacterial type
  • cytoskeletal protein binding
  • structural constituent of cytoskeleton
  • ankyrin binding
  • Plectin/S10 domain
  • actin binding
  • Plectin repeat
  • Family with sequence similarity 184, A and B
  • tail domain
  • Mitotic checkpoint protein
  • SPEC
  • Crescentin protein
  • chromosome segregation protein SMC, primarily archaeal type
  • exonuclease SbcC
  • Calponin homology domain
  • Weak chloroplast movement under blue light
  • PspA/IM30 family
  • Ezrin/radixin/moesin, alpha-helical domain
  • Hyaluronan mediated motility receptor N-terminal
  • rad50
  • C-terminal heptad repeat domain
  • Myosin tail
  • protein binding
  • Calcium binding and coiled-coil domain (CALCOCO1) like
  • Alpha helical coiled-coil rod protein (HCR)
  • actin filament binding
  • Domain of unknown function (DUF4659)
  • RecF/RecN/SMC N terminal domain
  • Spectrin repeats
  • Mechanosensitive ion channel porin domain
  • RIM-binding protein of the cytomatrix active zone
  • actin-binding domain
  • structural constituent of muscle
  • MAP7 (E-MAP-115) family
  • Trichohyalin-plectin-homology domain
  • intermediate filament binding domain
  • calponin homology (CH) domain superfamily
  • Spectrin repeat
  • Coiled-coil domain-containing protein 158
  • Intermediate filament protein
  • Apolipoprotein A1/A4/E domain

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • metastasis
  • neoplasia
  • epithelial cancer
  • hypercholesterolemia
  • early onset hypertension
  • epidermolysis bullosa simplex, ogna type
  • Alzheimer disease
  • epidermolysis bullosa simplex with pyloric atresia
  • hepatocellular carcinoma
  • liver cancer
regulated by
regulates
role in cell
  • apoptosis
  • activation in
  • production in
  • phosphorylation in
  • expression in
  • proliferation
  • growth
  • degeneration
  • necrosis
  • response

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • microsomal fraction
  • microtubule aster fraction
  • pH resistant lipid raft fraction
  • detergent resistant lipid raft fraction
  • intermediate filament cytoskeleton
  • extracellular vesicles
  • cell surface
  • cell periphery
  • intracellular space
  • basal compartment
  • perinuclear region
  • cellular membrane
  • focal adhesions
  • podosomes
  • Nucleus
  • Plasma Membrane
  • myofilaments
  • costameres
  • hemidesmosomes
  • cytosol
  • sarcoplasm
  • apical membrane
  • basal membrane
  • mitochondrial outer membrane
  • nuclear envelope
  • nuclear scaffolds
  • myelin sheath
  • myofibrils
  • sarcolemma
  • Z line
  • keratin intermediate filaments
  • brush border
  • axons
  • dendrites
  • exosomes
  • plasma
  • basement membrane

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Plec gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • response to food
  • multicellular organism growth
  • hemidesmosome assembly
  • adherens junction organization
  • respiratory electron transport chain
  • intermediate filament cytoskeleton organization
  • protein localization
  • myoblast differentiation
  • intermediate filament organization
  • establishment of skin barrier
  • keratinocyte development
  • wound healing
  • T cell chemotaxis
  • cellular response to fluid shear stress
  • skeletal muscle fiber development
  • peripheral nervous system myelin maintenance
  • transmission of nerve impulse
  • macromolecular complex subunit organization
  • cell morphogenesis
  • sarcomere organization
  • regulation of vascular permeability
  • nucleus organization
  • mitochondrion organization
  • leukocyte migration involved in immune response
  • cellular response to mechanical stimulus
  • cellular response to hydrostatic pressure
  • cardiac muscle cell development
  • gene expression
  • actin filament organization involved in cytokinetic actomyosin contractile ring assembly
  • skeletal myofibril assembly
  • fibroblast migration

Cellular Component

Where in the cell the gene product is active
  • myelin sheath
  • sarcoplasm
  • costamere
  • intermediate filament
  • mitochondrial outer membrane
  • plasma membrane
  • dendrite
  • Z disc
  • perinuclear region of cytoplasm
  • extracellular vesicular exosome
  • focal adhesion
  • intermediate filament cytoskeleton
  • brush border
  • cytoplasm
  • sarcolemma
  • cytosol
  • hemidesmosome
  • axon

Molecular Function

What the gene product does at the molecular level
  • actin filament binding
  • RNA binding
  • protein binding
  • structural constituent of muscle
  • ankyrin binding
  • cadherin binding
  • dystroglycan binding
  • structural constituent of cytoskeleton

Gene-Specific Assays for Results You Can Trust

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