Txnl4a Gene Summary [Rat]

The protein encoded by this gene is a member of the U5 small ribonucleoprotein particle (snRNP), and is involved in pre-mRNA splicing. This protein contains a thioredoxin-like fold and it is expected to interact with multiple proteins. Protein-protein interactions have been observed with the polyglutamine tract-binding protein 1 (PQBP1). Mutations in both the coding region and promoter region of this gene have been associated with Burn-McKeown syndrome, which is a rare disorder characterized by craniofacial dysmorphisms, cardiac defects, hearing loss, and bilateral choanal atresia. A pseudogene of this gene is found on chromosome 2. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2015]

Details

Type
Protein Coding
Official Symbol
Txnl4a
Official Name
thioredoxin-like 4A [Source:RGD Symbol;Acc:6492735]
Ensembl ID
ENSRNOG00000052004
Bio databases IDs NCBI: 100911462 Ensembl: ENSRNOG00000052004
Aliases thioredoxin-like 4A
Synonyms BMKS, D18Wsu98e, DIB1, DIM1, SNRNP15, thioredoxin-like 4A, THIOREDOXIN-LIKE protein 4A, TXNL4, U5-15kD, U5-15kDa, XNL4A
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Txnl4a often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
  • Mitosis protein DIM1
  • enzyme
  • protein binding

Pathways

Biological processes and signaling networks where the Txnl4a gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • Burn-McKeown syndrome
  • global developmental delay with intellectual disability
  • cold thyroid nodule
regulated by
role in cell
  • survival
  • cell viability
  • replication in
  • assembly
  • splicing by

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Cytoplasm
  • cytosol
  • spliceosomes
  • nucleoplasm

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Txnl4a gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • cell division
  • RNA splicing, via transesterification reactions
  • spliceosomal complex assembly
  • nuclear mRNA splicing, via spliceosome

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • U4/U6 x U5 tri-snRNP complex
  • U5 snRNP
  • cytosol
  • spliceosomal complex
  • U2-type precatalytic spliceosome
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • protein binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.