Lin28a Gene Summary [Rat]

This gene encodes a LIN-28 family RNA-binding protein that acts as a posttranscriptional regulator of genes involved in developmental timing and self-renewal in embryonic stem cells. The encoded protein functions through direct interaction with target mRNAs and by disrupting the maturation of certain miRNAs involved in embryonic development. This protein prevents the terminal processing of the LET7 family of microRNAs which are major regulators of cellular growth and differentiation. Aberrant expression of this gene is associated with cancer progression in multiple tissues. [provided by RefSeq, Sep 2015]

Details

Type
Protein Coding
Official Symbol
Lin28a
Official Name
lin-28 homolog A [Source:RGD Symbol;Acc:1566408]
Ensembl ID
ENSRNOG00000060320
Bio databases IDs NCBI: 500562 Ensembl: ENSRNOG00000060320
Aliases lin-28 homolog A
Synonyms CSDD1, Gm10299, LIN-28, lin-28 homolog A, RGD1566408, Tex17, ZCCHC1
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Lin28a often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • S1_like
  • mRNA binding
  • protein binding activity, bridging
  • protein binding
  • zinc finger domain
  • Cold shock protein domain
  • RNA binding

Pathways

Biological processes and signaling networks where the Lin28a gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • tumorigenesis
  • epithelial neoplasia
  • growth failure
  • mammary neoplasm
  • breast cancer
  • colorectal cancer
  • epithelial cancer
  • metastasis
  • cancer
regulated by
regulates
role in cell
  • proliferation
  • expression in
  • survival
  • growth
  • regeneration
  • accumulation in
  • processing in
  • differentiation
  • activation in
  • generation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • periendoplasmic reticulum area
  • cytoplasmic mRNA processing body
  • Nucleus
  • polysomes
  • cytosol
  • nucleoli
  • rough endoplasmatic reticulum
  • stress granule

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Lin28a gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • germ cell development
  • stem cell maintenance
  • pre-miRNA processing
  • positive regulation of neuron differentiation
  • negative regulation of glial cell differentiation
  • RNA 3' uridylation
  • stem cell differentiation
  • positive regulation of cytoplasmic translation
  • cellular response to glucose stimulus
  • RNA 3'-end processing
  • negative regulation of pre-miRNA processing
  • negative regulation of translation
  • positive regulation of TOR signaling cascade
  • positive regulation of protein kinase B signaling cascade
  • miRNA catabolic process

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • cytoplasmic stress granule
  • cytoplasm
  • rough endoplasmic reticulum
  • cytoplasmic mRNA processing body
  • cytosol
  • nucleolus

Molecular Function

What the gene product does at the molecular level
  • miRNA binding
  • zinc ion binding
  • protein binding
  • RNA binding
  • mRNA binding
  • G-quadruplex RNA binding
  • pre-miRNA binding
  • translation initiation factor binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.