Gar1 Gene Summary [Rat]

This gene is a member of the H/ACA snoRNPs (small nucleolar ribonucleoproteins) gene family. snoRNPs are involved in various aspects of rRNA processing and modification and have been classified into two families: C/D and H/ACA. The H/ACA snoRNPs also include the DKC1, NOLA2 and NOLA3 proteins. These four H/ACA snoRNP proteins localize to the dense fibrillar components of nucleoli and to coiled (Cajal) bodies in the nucleus. Both 18S rRNA production and rRNA pseudouridylation are impaired if any one of the four proteins is depleted. These four H/ACA snoRNP proteins are also components of the telomerase complex. The encoded protein of this gene contains two glycine- and arginine-rich domains and is related to Saccharomyces cerevisiae Gar1p. Two splice variants have been found for this gene. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
Gar1
Official Name
GAR1 ribonucleoprotein [Source:RGD Symbol;Acc:1563995]
Ensembl ID
ENSRNOG00000061146
Bio databases IDs NCBI: 499709 Ensembl: ENSRNOG00000061146
Aliases GAR1 ribonucleoprotein
Synonyms C430047J18Rik, GAR1 ribonucleoprotein, NOLA1
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Gar1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • RGG domain
  • Gar1/Naf1 RNA binding region
  • snoRNA binding
  • protein binding
  • RNA binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • rheumatoid arthritis
regulated by
role in cell
  • telomere-length maintenance

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • interchromatin granule cluster fractions
  • fibrillar center
  • gems
  • dense fibrillar component
  • nucleoplasm
  • nucleoli
  • Cajal bodies
  • telomeres
  • perikaryon

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Gar1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • telomere maintenance via telomerase
  • snoRNA guided rRNA pseudouridine synthesis

Cellular Component

Where in the cell the gene product is active
  • box H/ACA snoRNP complex
  • chromosome, telomeric region
  • box H/ACA scaRNP complex
  • telomerase holoenzyme complex
  • fibrillar center
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • RNA binding
  • telomeric RNA binding
  • box H/ACA snoRNA binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.