Setdb1 Gene Summary [Mouse]

Enables DNA binding activity; histone H3K9 methyltransferase activity; and promoter-specific chromatin binding activity. Involved in DNA methylation-dependent constitutive heterochromatin formation; negative regulation of single stranded viral RNA replication via double stranded DNA intermediate; and transposable element silencing by heterochromatin formation. Acts upstream of or within bone development; inner cell mass cell proliferation; and negative regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including 1-cell stage embryo; central nervous system; heart; long bone; and oocyte. Human ortholog(s) of this gene implicated in autistic disorder and lung cancer. Orthologous to human SETDB1 (SET domain bifurcated histone lysine methyltransferase 1). [provided by Alliance of Genome Resources, Jul 2025]

Details

Type
Retained Intron
Official Symbol
Setdb1
Official Name
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Ensembl ID
ENSMUSG00000015697
Bio databases IDs NCBI: 84505 Ensembl: ENSMUSG00000015697
Aliases SET domain, bifurcated 1
Synonyms ESET, H3-K9-HMTase4, KG1T, KMT1E, LOC100911180, LOC682228, mKIAA0067, SET domain, bifurcated 1, SET domain bifurcated histone lysine methyltransferase 1, TDRD21
Species
Mouse, Mus musculus
OrthologiesHumanRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Setdb1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Histone methyltransferase Tudor domain
  • chromatin binding
  • enzyme
  • protein binding
  • DNA binding
  • histone lysine N-methyltransferase activity (H3-K9 specific)
  • Domain of unknown function (DUF5604)
  • Pre-SET motif
  • histone methyltransferase
  • Histone methyltransferase Tudor domain 1
  • Tudor domain superfamily
  • MBD
  • N-terminal to some SET domains

Pathways

Biological processes and signaling networks where the Setdb1 gene in mouse plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • organismal death
  • prostate cancer
  • prostatic neoplasia
  • pelvic cancer
  • urogenital cancer
  • abdominal cancer
  • epithelial cancer
  • cancer
  • epithelial neoplasia
regulated by
regulates
role in cell
  • binding in
  • apoptosis
  • proliferation
  • phosphorylation in
  • growth
  • cell viability
  • migration
  • colony formation
  • survival
  • necroptosis

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • intracellular membrane-bounded organelle
  • Cytoplasm
  • nucleoplasm
  • chromatin
  • euchromatin compartments

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the mouse Setdb1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • heterochromatin organization
  • negative regulation of gene expression
  • chromatin remodeling
  • negative regulation of retroviral genome replication
  • positive regulation of methylation-dependent chromatin silencing
  • methylation

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • cytoplasm
  • intracellular membrane-bounded organelle
  • chromosome
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • DNA binding
  • zinc ion binding
  • protein binding
  • histone methyltransferase activity (H3-K9 specific)
  • chromatin binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.