SETDB1 Gene Summary [Human]

This gene encodes a histone methyltransferase which regulates histone methylation, gene silencing, and transcriptional repression. This gene has been identified as a target for treatment in Huntington Disease, given that gene silencing and transcription dysfunction likely play a role in the disease pathogenesis. Alternatively spliced transcript variants of this gene have been described.[provided by RefSeq, Jun 2011]

Details

Type
Protein Coding
Official Symbol
SETDB1
Official Name
SET domain bifurcated histone lysine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Ensembl ID
ENSG00000143379
Bio databases IDs NCBI: 9869 Ensembl: ENSG00000143379
Aliases SET domain bifurcated histone lysine methyltransferase 1, tudor domain containing 21
Synonyms ESET, H3-K9-HMTase4, KG1T, KMT1E, LOC100911180, LOC682228, mKIAA0067, SET domain, bifurcated 1, SET domain bifurcated histone lysine methyltransferase 1, TDRD21
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SETDB1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Histone methyltransferase Tudor domain
  • chromatin binding
  • enzyme
  • protein binding
  • DNA binding
  • histone lysine N-methyltransferase activity (H3-K9 specific)
  • Domain of unknown function (DUF5604)
  • Pre-SET motif
  • histone methyltransferase
  • Histone methyltransferase Tudor domain 1
  • Tudor domain superfamily
  • MBD
  • N-terminal to some SET domains

Pathways

Biological processes and signaling networks where the SETDB1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • organismal death
  • prostate cancer
  • prostatic neoplasia
  • pelvic cancer
  • urogenital cancer
  • abdominal cancer
  • epithelial cancer
  • cancer
  • epithelial neoplasia
regulated by
regulates
role in cell
  • binding in
  • apoptosis
  • proliferation
  • phosphorylation in
  • growth
  • cell viability
  • migration
  • colony formation
  • survival
  • necroptosis

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • intracellular membrane-bounded organelle
  • Cytoplasm
  • nucleoplasm
  • chromatin
  • euchromatin compartments

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SETDB1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • heterochromatin organization
  • negative regulation of gene expression
  • chromatin remodeling
  • negative regulation of retroviral genome replication
  • positive regulation of methylation-dependent chromatin silencing
  • methylation

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • cytoplasm
  • intracellular membrane-bounded organelle
  • chromosome
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • DNA binding
  • zinc ion binding
  • protein binding
  • histone methyltransferase activity (H3-K9 specific)
  • chromatin binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.