COL17A1 Gene Summary [Human]

This gene encodes the alpha chain of type XVII collagen. Unlike most collagens, collagen XVII is a transmembrane protein. Collagen XVII is a structural component of hemidesmosomes, multiprotein complexes at the dermal-epidermal basement membrane zone that mediate adhesion of keratinocytes to the underlying membrane. Mutations in this gene are associated with both generalized atrophic benign and junctional epidermolysis bullosa. Two homotrimeric forms of type XVII collagen exist. The full length form is the transmembrane protein. A soluble form, referred to as either ectodomain or LAD-1, is generated by proteolytic processing of the full length form. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
COL17A1
Official Name
collagen type XVII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2194]
Ensembl ID
ENSG00000065618
Bio databases IDs NCBI: 1308 Ensembl: ENSG00000065618
Aliases collagen type XVII alpha 1 chain
Synonyms BA16H23.2, BP180, BPA-2, Bpag, BPAG2, COL17, collagen, type XVII, alpha 1, collagen type XVII alpha 1 chain, collagen, type XVII, α 1, collagen type XVII α 1 chain, EBR2A, ERED, JEB4, LAD-1
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human COL17A1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • extracellular domain
  • cytoplasmic domain
  • ectodomain
  • Collagen triple helix repeat (20 copies)
  • protein binding

Pathways

Biological processes and signaling networks where the COL17A1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • intermediate junctional epidermolysis bullosa-4
  • breast cancer
  • intermediate junctional epidermolysis bullosa type 1A
  • tuberculosis
  • premature graying
  • epithelial recurrent erosion dystrophy
  • amelogenesis imperfecta type IA
  • hereditary disorder
  • junctional epidermolysis bullosa
regulated by
role in cell
  • migration
  • cell viability
  • production in
  • proliferation
  • number
  • recruitment
  • quantity
  • degranulation
  • directional motility
  • stability

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Extracellular Space
  • cell-substratum contacts
  • cell surface
  • cellular membrane
  • Plasma Membrane
  • intercellular junctions
  • hemidesmosomes
  • cell-cell contacts
  • endoplasmic reticulum lumen
  • basement membrane
  • glomerular basement membrane
  • endothelial basement membrane

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human COL17A1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • cell-matrix adhesion
  • hemidesmosome assembly
  • extracellular matrix organization
  • epidermis development

Cellular Component

Where in the cell the gene product is active
  • endoplasmic reticulum lumen
  • basement membrane
  • extracellular space
  • cell-cell junction
  • collagen
  • hemidesmosome
  • extracellular region
  • plasma membrane

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • extracellular matrix structural constituent conferring tensile strength
  • heparin binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.