SF3A1 Gene Summary [Human]

This gene encodes a subunit of the splicing factor 3a protein complex. The splicing factor 3a heterotrimer is a component of the mature U2 small nuclear ribonucleoprotein particle (snRNP). U2 small nuclear ribonucleoproteins play a critical role in spliceosome assembly and pre-mRNA splicing. [provided by RefSeq, Aug 2014]

Details

Type
Protein Coding
Official Symbol
SF3A1
Official Name
splicing factor 3a subunit 1 [Source:HGNC Symbol;Acc:HGNC:10765]
Ensembl ID
ENSG00000099995
Bio databases IDs NCBI: 10291 Ensembl: ENSG00000099995
Aliases splicing factor 3a subunit 1
Synonyms 1200014H24Rik, 5930416L09Rik, PRP21, PRPF21, SAP114, SF3A120, SF3A p120, splicing factor 3A subunit 1, splicing factor 3a, subunit 1
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SF3A1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Ubiquitin family
  • Pre-mRNA splicing factor PRP21 like protein
  • Ubl1_cv_Nsp3_N-like
  • Ubiquitin homologues
  • Surp module
  • protein binding
  • Suppressor-of-White-APricot splicing regulator
  • RNA binding

Pathways

Biological processes and signaling networks where the SF3A1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • cancer
  • B-cell non-Hodgkin disease
  • non-Hodgkin disease
  • lymphomagenesis
  • B cell cancer
  • mature B-cell neoplasia
  • B-cell neoplasia
  • hematologic cancer
  • lymphoid cancer
  • hematological neoplasia
regulated by
regulates
role in cell
  • cell death
  • cell viability
  • splicing by
  • replication in
  • alternative splicing in
  • innate immune response in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • catalytic step 2 spliceosome
  • spliceosomes
  • nucleoplasm
  • interchromatin granule clusters
  • nuclear speckles

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SF3A1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • nuclear mRNA cis splicing, via spliceosome
  • mRNA processing
  • nuclear mRNA 3'-splice site recognition
  • nuclear mRNA splicing, via spliceosome

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • catalytic step 2 spliceosome
  • nuclear speck
  • spliceosomal complex
  • U2-type prespliceosome
  • U2-type spliceosomal complex
  • U2-type precatalytic spliceosome
  • U2 snRNP
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • RNA binding
  • protein binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.