CLCN3 Gene Summary [Human]

This gene encodes a member of the voltage-gated chloride channel (ClC) family. The encoded protein is present in all cell types and localized in plasma membranes and in intracellular vesicles. It is a multi-pass membrane protein which contains a ClC domain and two additional C-terminal CBS (cystathionine beta-synthase) domains. The ClC domain catalyzes the selective flow of Cl- ions across cell membranes, and the CBS domain may have a regulatory function. This protein plays a role in both acidification and transmitter loading of GABAergic synaptic vesicles, and in smooth muscle cell activation and neointima formation. This protein is required for lysophosphatidic acid (LPA)-activated Cl- current activity and fibroblast-to-myofibroblast differentiation. The protein activity is regulated by Ca(2+)/calmodulin-dependent protein kinase II (CaMKII) in glioma cells. Multiple alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Aug 2011]

Details

Type
Protein Coding
Official Symbol
CLCN3
Official Name
chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
Ensembl ID
ENSG00000109572
Bio databases IDs NCBI: 1182 Ensembl: ENSG00000109572
Aliases chloride voltage-gated channel 3
Synonyms chloride channel, voltage-sensitive 3, chloride voltage-gated channel 3, CLC3, NEDHYBA, NEDSBA
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human CLCN3 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Voltage_gated_ClC
  • volume-sensitive anion channel
  • Domain in cystathionine beta-synthase and other proteins
  • CBS domain
  • Voltage gated chloride channel
  • protein binding
  • ion channel
  • PDZ-domain binding
  • CBS_pair_SF
  • chloride channel
  • antiporter
  • voltage-gated ion channel
  • voltage-gated chloride channel

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • seizures
  • hippocampal atrophy
  • amyotrophic lateral sclerosis
  • non-small cell lung cancer
  • schizophrenia
  • asthma
  • non-small cell lung carcinoma
  • kyphoscoliosis
  • tremor
  • neurodevelopmental disorder with seizures and brain abnormalities
regulated by
regulates
role in cell
  • expression in
  • migration
  • expansion
  • number
  • volume
  • abnormal morphology
  • function
  • chemotaxis
  • degeneration
  • loss

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • endosomal fractions
  • synaptic vesicle membrane
  • glutaminergic synapse
  • intracellular membrane-bounded organelle
  • cell surface
  • intracellular membranes
  • cellular membrane
  • endosomes
  • vesicles
  • Golgi Apparatus
  • granules
  • vesicle membrane
  • plasma membrane extracellular face
  • apical membrane
  • postsynaptic membrane
  • lysosome membrane
  • endosomal membrane
  • synaptic vesicles
  • nerve ending
  • synapse
  • recycling endosomes
  • early endosomes
  • late endosomes
  • cytoplasmic vesicles
  • synaptic-like microvesicles
  • specific granules
  • secretory granules
  • cell membrane leading edge
  • axon terminals
  • phagosomes
  • lamellipodia
  • mossy fibers
  • vesicle fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human CLCN3 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • phagocytosis, engulfment
  • negative regulation of cell volume
  • photoreceptor cell maintenance
  • endosomal lumen acidification
  • adult locomotory behavior
  • synaptic transmission, GABAergic
  • regulation of pH
  • synaptic transmission, glutamatergic

Cellular Component

Where in the cell the gene product is active
  • secretory granule
  • synaptic vesicle
  • late endosome
  • phagocytic vesicle
  • external side of plasma membrane
  • Golgi membrane
  • Golgi apparatus
  • axon terminus
  • plasma membrane
  • lysosomal membrane
  • cell surface
  • early endosome membrane
  • late endosome membrane
  • early endosome
  • specific granule
  • vesicle membrane
  • intracellular membrane-bounded organelle
  • membrane
  • ruffle membrane
  • cytoplasmic vesicle
  • endosome membrane
  • recycling endosome
  • synaptic vesicle membrane

Molecular Function

What the gene product does at the molecular level
  • ATP binding
  • protein binding
  • antiporter activity
  • volume-sensitive chloride channel activity
  • PDZ domain binding
  • chloride channel activity
  • voltage-gated chloride channel activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.