SF3B6 Gene Summary [Human]

This gene encodes a 14 kDa protein subunit of the splicing factor 3b complex. Splicing factor 3b associates with both the U2 and U11/U12 small nuclear ribonucleoprotein complexes (U2 snRNP) of spliceosomes. This 14 kDa protein interacts directly with subunit 1 of the splicing factor 3b complex. This 14 kDa protein also interacts directly with the adenosine that carries out the first transesterification step of splicing at the pre-mRNA branch site. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
SF3B6
Official Name
splicing factor 3b subunit 6 [Source:HGNC Symbol;Acc:HGNC:30096]
Ensembl ID
ENSG00000115128
Bio databases IDs NCBI: 51639 Ensembl: ENSG00000115128
Aliases splicing factor 3b subunit 6, pre mRNA branch site protein p14
Synonyms 0610009D07Rik, 6030419K15Rik, CGI-110, HSPC175, Ht006, P14, SAP14, SAP14a, Sap14/Sf3b, SF3B14, SF3B14a, splicing factor 3b subunit 6, splicing factor 3B, subunit 6
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SF3B6 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • RNA recognition motif (RRM) superfamily
  • RNA recognition motif
  • mRNA binding
  • protein binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • systemic juvenile idiopathic arthritis
regulated by
role in cell
  • cell death
  • apoptosis
  • replication in
  • necroptosis
  • splicing by
  • processing in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • spliceosomes
  • nucleoplasm
  • interchromatin granule clusters

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SF3B6 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • blastocyst formation
  • nuclear mRNA splicing, via spliceosome

Cellular Component

Where in the cell the gene product is active
  • U12-type spliceosomal complex
  • nucleus
  • catalytic step 2 spliceosome
  • precatalytic spliceosome
  • spliceosomal complex
  • U2-type spliceosomal complex
  • U2 snRNP
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • RNA binding
  • protein binding
  • mRNA binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.