LDB3 Gene Summary [Human]

This gene encodes a PDZ domain-containing protein. PDZ motifs are modular protein-protein interaction domains consisting of 80-120 amino acid residues. PDZ domain-containing proteins interact with each other in cytoskeletal assembly or with other proteins involved in targeting and clustering of membrane proteins. The protein encoded by this gene interacts with alpha-actinin-2 through its N-terminal PDZ domain and with protein kinase C via its C-terminal LIM domains. The LIM domain is a cysteine-rich motif defined by 50-60 amino acids containing two zinc-binding modules. This protein also interacts with all three members of the myozenin family. Mutations in this gene have been associated with myofibrillar myopathy and dilated cardiomyopathy. Alternatively spliced transcript variants encoding different isoforms have been identified; all isoforms have N-terminal PDZ domains while only longer isoforms (1, 2 and 5) have C-terminal LIM domains. [provided by RefSeq, Jan 2010]

Details

Type
Protein Coding
Official Symbol
LDB3
Official Name
LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:15710]
Ensembl ID
ENSG00000122367
Bio databases IDs NCBI: 11155 Ensembl: ENSG00000122367
Aliases LIM domain binding 3, cypher, oracle, Z-band alternatively spliced PDZ motif protein
Synonyms CMD1C, CMH24, CMPD3, CYPHER, LDB3Z1, LDB3Z4, LIM Domain Binding 3, LVNC3, MFM4, ORACLE, PDLIM6, RGD1564875, ZASP
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human LDB3 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Domain of unknown function (DUF4749)
  • Domain present in PSD-95, Dlg, and ZO-1/2
  • LIM is a small protein-protein interaction domain, containing two zinc fingers
  • actinin binding
  • protein kinase C binding
  • canonical PDZ domain
  • enzyme binding
  • protein binding
  • PDZ domain
  • Domain of unknown function (DUF3432)
  • YS/TPS/TP repeat
  • cytoskeletal protein binding
  • ZASP-like motif
  • transporter

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • cardiomyopathy
  • myocardial infarction
  • squamous cell cancer of the oral cavity
  • breast cancer
  • myofibrilliar myopathy ZASP-related
  • glioblastoma
  • glioblastoma cancer
  • dilated cardiomyopathy 1C
  • dilated cardiomyopathy with left ventricular noncompaction type 1c
  • oral squamous cell carcinoma
regulated by
regulates
  • F Actin
role in cell
  • accumulation in
  • assembly
  • maintenance
  • structural integrity
  • disruption in
  • sarcomerogenesis in
  • disruption
  • organization

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • cytoskeleton
  • perinuclear region
  • myofibrils
  • intercalated disks
  • Z line
  • zonula adherens
  • pseudopodia

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human LDB3 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • heart development
  • sarcomere organization
  • muscle structure development
  • actin cytoskeleton organization

Cellular Component

Where in the cell the gene product is active
  • Z disc
  • adherens junction
  • perinuclear region of cytoplasm
  • cytoskeleton
  • stress fiber
  • pseudopodium
  • filamentous actin

Molecular Function

What the gene product does at the molecular level
  • protein kinase C binding
  • protein binding
  • actin binding
  • metal ion binding
  • muscle alpha-actinin binding
  • cytoskeletal protein binding

Gene-Specific Assays for Results You Can Trust

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