DDX56 Gene Summary [Human]

This gene encodes a member of the DEAD box protein family. DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene shows ATPase activity in the presence of polynucleotides and associates with nucleoplasmic 65S preribosomal particles. This gene may be involved in ribosome synthesis, most likely during assembly of the large 60S ribosomal subunit. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2012]

Details

Type
Protein Coding
Official Symbol
DDX56
Official Name
DEAD-box helicase 56 [Source:HGNC Symbol;Acc:HGNC:18193]
Ensembl ID
ENSG00000136271
Bio databases IDs NCBI: 54606 Ensembl: ENSG00000136271
Aliases DEAD-box helicase 56, nucleolar helicase of 61 kDa
Synonyms 2600001H07Rik, D11Ertd619e, DDX21, DDX26, DEAD-box helicase 56, DEAD-box protein 56, LOC100911468, LOC103693777, NOH61, RH-II/Gu
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human DDX56 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • helicase superfamily c-terminal domain
  • DEAD/DEAH box helicase
  • Type III restriction enzyme, res subunit
  • N-terminal helicase domain of the DEAD-box helicase superfamily
  • protein binding
  • DEAD-like helicases superfamily
  • Helicase conserved C-terminal domain
  • RNA helicase
  • P-loop containing Nucleoside Triphosphate Hydrolases
  • RNA binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • hepatocellular carcinoma
  • liver cancer
  • epithelial cancer
  • endometrial adenocarcinoma
  • endometrial adenocarcinoma formation
  • breast carcinoma
  • renal clear cell adenocarcinoma
  • renal clear cell cancer
  • breast cancer
  • head and neck squamous cell carcinoma
regulated by
  • Zaire ebolavirus
  • tetrachlorodibenzodioxin
  • let-7 (includes others)
  • macrophages
  • TP53
  • IFNA2
  • PHF12
  • sirolimus
  • DAP3
  • YAP1
role in cell
  • growth
  • survival
  • replication in
  • development
  • pluripotency

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • cytosol
  • granular components
  • nucleoli
  • nuclear envelope

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human DDX56 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • negative regulation of type I interferon production
  • defense response to virus
  • positive regulation of neuron projection development
  • rRNA processing

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • membrane
  • cytosol
  • nucleolus

Molecular Function

What the gene product does at the molecular level
  • ATPase activity
  • ATP binding
  • protein binding
  • RNA binding
  • RNA helicase activity
  • RNA stem-loop binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.