RPGR Gene Summary [Human]

This gene encodes a protein with a series of six RCC1-like domains (RLDs), characteristic of the highly conserved guanine nucleotide exchange factors. The encoded protein is found in the Golgi body and interacts with RPGRIP1. This protein localizes to the outer segment of rod photoreceptors and is essential for their viability. Mutations in this gene have been associated with X-linked retinitis pigmentosa (XLRP). Multiple alternatively spliced transcript variants that encode different isoforms of this gene have been reported, but the full-length natures of only some have been determined. [provided by RefSeq, Dec 2008]

Details

Type
Protein Coding
Official Symbol
RPGR
Official Name
retinitis pigmentosa GTPase regulator [Source:HGNC Symbol;Acc:HGNC:10295]
Ensembl ID
ENSG00000156313
Bio databases IDs NCBI: 6103 Ensembl: ENSG00000156313
Aliases retinitis pigmentosa GTPase regulator
Synonyms COD1, CORDX1, CRD, mRpgr, orf15, PCDX, Rd9, retinitis pigmentosa GTPase regulator, RP15, RP3, Rp3h, XLRP3
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human RPGR often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Regulator of chromosome condensation (RCC1) repeat
  • chromosome condensation 1-like domain
  • guanyl-nucleotide exchange factor
  • protein binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • primary ciliary dyskinesia
  • retinitis pigmentosa type 3
  • retinitis pigmentosa
  • retinal dystrophy
  • X-linked cone-rod dystrophy type 1
  • X-linked atrophic macular degeneration
  • X-linked retinitis pigmentosa
  • X-linked cone rod dystrophy
  • X-linked retinitis pigmentosa and sinorespiratory infections with deafness
  • X-linked retinitis pigmentosa and sinorespiratory infections
regulated by
regulates
role in cell
  • quantity
  • number
  • development
  • assembly
  • response by
  • electrophysiology
  • proteolysis in
  • abnormal morphology

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • detergent-insoluble membrane fraction
  • cilia
  • basal bodies
  • centrosome
  • Golgi Apparatus
  • flagella
  • axonemes
  • cytosol
  • connecting cilia
  • sperm tail
  • photoreceptor outer segments
  • photoreceptor inner segments
  • cellular protrusions
  • rod outer segments
  • cone outer segments

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human RPGR gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • intraflagellar transport
  • cilium morphogenesis
  • intracellular protein transport
  • visual perception
  • ubiquitin-dependent protein catabolic process
  • protein ubiquitination

Cellular Component

Where in the cell the gene product is active
  • centrosome
  • cytoplasm
  • cilium basal body
  • Golgi apparatus
  • sperm flagellum
  • photoreceptor outer segment

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • RNA binding
  • guanyl-nucleotide exchange factor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.