CLRN1 Gene Summary [Human]

This gene encodes a protein that contains a cytosolic N-terminus, multiple helical transmembrane domains, and an endoplasmic reticulum membrane retention signal, TKGH, in the C-terminus. The encoded protein may be important in development and homeostasis of the inner ear and retina. Mutations within this gene have been associated with Usher syndrome type IIIa. Multiple transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
CLRN1
Official Name
clarin 1 [Source:HGNC Symbol;Acc:HGNC:12605]
Ensembl ID
ENSG00000163646
Bio databases IDs NCBI: 7401 Ensembl: ENSG00000163646
Aliases clarin 1
Synonyms A130002D11Rik, clarin-1, RP61, USH3, USH3A
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human CLRN1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • protein binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • Usher syndrome type 3A
  • retinitis pigmentosa type 61
  • Usher syndrome type 3
  • retinal dystrophy
  • Usher syndrome
  • retinitis pigmentosa
  • hearing loss
regulated by
role in cell
  • motility
  • formation
  • assembly
  • organization
  • maintenance
  • disorganization
  • function
  • orientation
  • lack
  • reorganization

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • microtubule cytoskeleton
  • basal compartment
  • cellular membrane
  • Golgi Apparatus
  • stereocilia
  • cellular protrusions
  • microvilli
  • lamellipodia

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human CLRN1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • cell motility
  • sensory perception of sound
  • auditory receptor cell stereocilium organization
  • positive regulation of lamellipodium assembly
  • photoreceptor cell maintenance
  • equilibrioception
  • actin filament organization
  • sensory perception of light stimulus
  • visual perception

Cellular Component

Where in the cell the gene product is active
  • microtubule cytoskeleton
  • basal part of cell
  • microvillus
  • trans-Golgi network transport vesicle
  • stereocilium
  • plasma membrane
  • lamellipodium

Molecular Function

What the gene product does at the molecular level
  • protein binding

Gene-Specific Assays for Results You Can Trust

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