SCN11A Gene Summary [Human]

Voltage-gated sodium channels are transmembrane glycoprotein complexes composed of a large alpha subunit with 24 transmembrane domains and one or more regulatory beta subunits. They are responsible for the generation and propagation of action potentials in neurons and muscle. This gene encodes one member of the sodium channel alpha subunit gene family, and is highly expressed in nociceptive neurons of dorsal root ganglia and trigeminal ganglia. It mediates brain-derived neurotrophic factor-evoked membrane depolarization and is a major effector of peripheral inflammatory pain hypersensitivity. Mutations in this gene have been associated with hereditary sensory and autonomic neuropathy type VII and familial episodic pain syndrome-3. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2017]

Details

Type
Protein Coding
Official Symbol
SCN11A
Official Name
sodium voltage-gated channel alpha subunit 11 [Source:HGNC Symbol;Acc:HGNC:10583]
Ensembl ID
ENSG00000168356
Bio databases IDs NCBI: 11280 Ensembl: ENSG00000168356
Aliases sodium voltage-gated channel alpha subunit 11
Synonyms FEPS3, HSAN7, LOC105377643, NaN, NaT, NAV1.9, NSS2, PN5, SCN12A, SNS-2, sodium channel, voltage-gated, type XI, alpha, sodium channel, voltage-gated, type XI, α, sodium voltage-gated channel alpha subunit 11, sodium voltage-gated channel α subunit 11
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SCN11A often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Sodium ion transport-associated
  • Voltage-dependent L-type calcium channel, IQ-associated
  • voltage-gated sodium channel
  • Ion transport protein
  • protein binding
  • ion channel
  • Polycystin cation channel

Pathways

Biological processes and signaling networks where the SCN11A gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
disease
  • weight gain
  • seizures
  • hereditary disorder
  • epilepsy
  • migraines
  • thermal hypalgesia
  • familial episodic pain syndrome type 3
  • partial seizure without secondary generalization
  • amyotrophic lateral sclerosis
  • Huntington disease
regulated by
  • norepinephrine
  • adenosine triphosphate
  • KNG1
  • prostaglandin E2
  • histamine
  • decitabine
  • CYM50260
  • DICER1
  • GDNF
  • riluzole
regulates
role in cell
  • motility
  • depolarization
  • response
  • action potential
  • development
  • transmission
  • transmembrane potential

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • glutaminergic synapse
  • axon component
  • cell surface
  • cell periphery
  • cellular membrane
  • presynaptic membrane
  • neurites
  • perikaryon
  • axons
  • C fiber

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SCN11A gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • response to prostaglandin E stimulus
  • response to xenobiotic stimulus
  • artery development
  • mast cell degranulation
  • reflex
  • response to toxin
  • response to heat
  • axonogenesis
  • thigmotaxis
  • protein kinase A signaling cascade
  • response to auditory stimulus
  • calcium ion transmembrane transport
  • thermosensory behavior
  • response to nitric oxide
  • regulation of action potential in neuron
  • regulation of cardiac muscle cell action potential involved in contraction
  • behavioral response to acetic acid induced pain
  • micturition
  • response to high light intensity
  • skeletal muscle organ development
  • behavioral response to formalin induced pain
  • circadian rhythm
  • cell motility
  • chronic inflammatory response
  • acute inflammatory response
  • sensory perception of pain
  • sodium ion transmembrane transport
  • detection of mechanical stimulus involved in sensory perception of pain
  • membrane depolarization involved in regulation of action potential
  • detection of temperature stimulus involved in sensory perception of pain
  • cellular response to cold

Cellular Component

Where in the cell the gene product is active
  • extracellular vesicular exosome
  • axonal growth cone
  • C-fiber
  • voltage-gated sodium channel complex
  • neuronal cell body
  • axon
  • plasma membrane

Molecular Function

What the gene product does at the molecular level
  • voltage-gated sodium channel activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.