CIITA Gene Summary [Human]

This gene encodes a protein with an acidic transcriptional activation domain, 4 LRRs (leucine-rich repeats) and a GTP binding domain. The protein is located in the nucleus and acts as a positive regulator of class II major histocompatibility complex gene transcription, and is referred to as the "master control factor" for the expression of these genes. The protein also binds GTP and uses GTP binding to facilitate its own transport into the nucleus. Once in the nucleus it does not bind DNA but rather uses an intrinsic acetyltransferase (AT) activity to act in a coactivator-like fashion. Mutations in this gene have been associated with bare lymphocyte syndrome type II (also known as hereditary MHC class II deficiency or HLA class II-deficient combined immunodeficiency), increased susceptibility to rheumatoid arthritis, multiple sclerosis, and possibly myocardial infarction. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2013]

Details

Type
Protein Coding
Official Symbol
CIITA
Official Name
class II major histocompatibility complex transactivator [Source:HGNC Symbol;Acc:HGNC:7067]
Ensembl ID
ENSG00000179583
Bio databases IDs NCBI: 4261 Ensembl: ENSG00000179583
Aliases class II major histocompatibility complex transactivator, NLR family, acid domain containing, nucleotide-binding oligomerization domain, leucine rich repeat and acid domain containing
Synonyms C2TA, C2TA10, CIITAIV, Ciita Type 4, class II major histocompatibility complex transactivator, class II, major histocompatibility complex, transactivator, class II transactivator, EG669998, Gm9475, LOC100503847, MHC2D1, MHC2TA, NLRA
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human CIITA often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • NLRC4 helical domain HD2
  • transcription regulator
  • transcription co-activator
  • GTP-binding protein motif, guanosine specific
  • transcription co-repressor
  • Pst domain
  • Leucine rich repeat
  • transcription activation domain
  • transcription factor binding
  • Leucine Rich repeats (2 copies)
  • NACHT domain
  • leucine-rich repeat
  • GTP binding motif, P-loop
  • P-loop containing Nucleoside Triphosphate Hydrolases
  • GTP binding domain
  • magnesium binding domain
  • leucine rich domain
  • protein phosphatase 1 regulatory subunit 42
  • nuclear export signal
  • nucleic acid binding
  • GTP binding motif, magnesium-coordinating
  • histone deacetylase binding
  • protein binding
  • sequence-specific DNA binding
  • acidic domain
  • p300/cbp binding domain
  • binding protein
  • STP box
  • double-stranded DNA binding
  • Leucine rich repeat, ribonuclease inhibitor type
  • CBP binding domain

Pathways

Biological processes and signaling networks where the CIITA gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • squamous cell cancer
  • epithelial cancer
  • asthma
  • acne
  • infection
  • bare lymphocyte syndrome type II
  • Huntington disease
  • bare lymphocyte syndrome type II complementation group A
  • non-Hodgkin lymphoma
regulated by
regulates
role in cell
  • expression in
  • proliferation
  • differentiation
  • formation
  • activation in
  • inhibition in
  • number
  • quantity
  • development
  • cellular infiltration by

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Cytoplasm
  • cell surface
  • cytosol
  • nucleoplasm
  • PML nuclear bodies
  • plasma
  • cytoplasmic fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human CIITA gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • negative regulation of transcription from RNA polymerase II promoter
  • negative regulation of collagen biosynthetic process
  • immune response
  • negative regulation of transcription, DNA-dependent
  • positive regulation of transcription, DNA-dependent
  • negative regulation of viral entry into host cell
  • response to interferon-gamma
  • response to antibiotic
  • positive regulation of MHC class I biosynthetic process
  • positive regulation of transcription from RNA polymerase II promoter
  • positive regulation of MHC class II biosynthetic process

Cellular Component

Where in the cell the gene product is active
  • PML body
  • cytosol
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • GTP binding
  • ATP binding
  • DNA binding
  • transferase activity, transferring acyl groups
  • protein binding
  • transcription coactivator activity
  • transcription regulatory region sequence-specific DNA binding
  • protein serine/threonine kinase activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.