HLA-C Gene Summary [Human]

HLA-C belongs to the HLA class I heavy chain paralogues. This class I molecule is a heterodimer consisting of a heavy chain and a light chain (beta-2 microglobulin). The heavy chain is anchored in the membrane. Class I molecules play a central role in the immune system by presenting peptides derived from endoplasmic reticulum lumen. They are expressed in nearly all cells. The heavy chain is approximately 45 kDa and its gene contains 8 exons. Exon one encodes the leader peptide, exons 2 and 3 encode the alpha1 and alpha2 domain, which both bind the peptide, exon 4 encodes the alpha3 domain, exon 5 encodes the transmembrane region, and exons 6 and 7 encode the cytoplasmic tail. Polymorphisms within exon 2 and exon 3 are responsible for the peptide binding specificity of each class one molecule. Typing for these polymorphisms is routinely done for bone marrow and kidney transplantation. About 6000 HLA-C alleles have been described. The HLA system plays an important role in the occurrence and outcome of infectious diseases, including those caused by the malaria parasite, the human immunodeficiency virus (HIV), and the severe acute respiratory syndrome coronavirus (SARS-CoV). The structural spike and the nucleocapsid proteins of the novel coronavirus SARS-CoV-2, which causes coronavirus disease 2019 (COVID-19), are reported to contain multiple Class I epitopes with predicted HLA restrictions. Individual HLA genetic variation may help explain different immune responses to a virus across a population.[provided by RefSeq, Aug 2020]

Details

Type
Retained Intron
Official Symbol
HLA-C
Official Name
major histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]
Ensembl ID
ENSG00000204525
Bio databases IDs NCBI: 3107 Ensembl: ENSG00000204525
Aliases major histocompatibility complex, class I, C
Synonyms D6S204, HLA-C isoform 1, HLA CLASS I LOCUS C, HLA-Cw, HLA-CW3, HLA-CW4, HLA-Cw6, HLA-Cw7 alpha chain, HLA-Cw7 α chain, HLA-JY3, major histocompatibility complex, class I, C, MHC, MHC-1, PSORS1
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human HLA-C often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Immunoglobulin C1-set domain
  • Class I Histocompatibility antigen, domains alpha 1 and 2
  • TAP binding
  • immunoglobulin domain
  • protein binding
  • cytosolic tail domain
  • peptide antigen binding

Pathways

Biological processes and signaling networks where the HLA-C gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • prostate cancer
  • plaque psoriasis
  • atopic dermatitis
  • psoriasis
  • microscopic hematuria
  • susceptibility to HIV-1 viremia
  • allergic contact eczema
  • oral lichen planus
  • COVID-19
  • sepsis
regulated by
  • HNF4A
  • OSM
  • interferon alpha
  • KIR2DL1
  • lactacystin
  • K5
  • Sendai virus
  • Influenza A virus (A/Puerto Rico/8/34(H1N1))
  • 721.221 cells
  • IFNB1
regulates
role in cell
  • phosphorylation in
  • activation in
  • inhibition
  • activity
  • activation
  • signaling in
  • induction
  • binding
  • stimulation
  • viral entry in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • pH resistant lipid raft fraction
  • detergent resistant lipid raft fraction
  • endoplasmic reticulum mitochondria contact site
  • cell surface
  • cell periphery
  • cellular membrane
  • vesicles
  • Golgi Apparatus
  • Endoplasmic Reticulum
  • secretory granule membrane
  • Golgi membrane
  • endosomal membrane
  • phagosomes

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human HLA-C gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • immune response
  • innate immune response
  • adaptive immune response
  • positive regulation of T cell mediated cytotoxicity
  • antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent
  • antigen processing and presentation of endogenous peptide antigen via MHC class Ib

Cellular Component

Where in the cell the gene product is active
  • external side of plasma membrane
  • Golgi apparatus
  • endoplasmic reticulum
  • Golgi membrane
  • plasma membrane
  • cell surface
  • MHC class I protein complex
  • early endosome membrane
  • secretory granule membrane
  • extracellular space
  • extracellular vesicular exosome
  • ER to Golgi transport vesicle membrane
  • membrane
  • phagocytic vesicle membrane
  • recycling endosome membrane

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • peptide antigen binding
  • receptor binding
  • TAP binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.